Publications

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Author Title Type [ Year(Asc)]
2012
V. Guallar, PELE: Low Cost Protein-Ligand Dynamics and Induced Fit, Structural & Computational Chemistry, Discovery Congress Chemistry, Munich (Germany) . 2012.
V. Guallar, PELE: Low Cost Protein-Ligand Dynamics and Induced Fit, Structural & Computational Chemistry, Discovery Congress Chemistry, Munich (Germany) . 2012.
S. Reine and et al., Petascaling and Performance Analysis of DALTON on Different Platforms, in PRACE white paper, 2012.
O. Jorba, Dabdub, D., Blaszczak-Boxe, C., Pérez, C., Janjic, Z., Baldasano, J. M., Spada, M., Badia, A., and Gonçalves, M., Potential significance of photoexcited NO2 on global air quality with the NMMB/BSC chemical transport model, Journal of Geophysical Research, vol. 117, no. D13301. AMER GEOPHYSICAL UNION, UNITED STATES, pp. 1-16, 2012.
T. Hussain, Shafiq, M., Pericàs, M., Nacho, N., and Ayguadé, E., PPMC : A Programmable Pattern based Memory Controller, Applied Reconfigurable Computing (ARC). HongKong, China, pp. 1–12, 2012.
T. Hussain, Navarro, N., Ayguadé, E., and Pericàs, M., PPMC : Hardware Scheduling and Memory Management Support for Multi Accelerators, 22nd International Conference on Field Programmable Logic and Applications (FPL-2012. Oslo, Norway, 2012.
S. González, Montserrat, B., Sánchez, F., Puiggros, M., Blanco, E., Martinez, L., Ramirez, A., and Torrents, D., Prediction of regulatory regions using ReLA". 16th Annual International Conference on Research in Computational Molecular Biology, 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB. 2012.
F. Cazorla, Quiñones, E., Vardanega, T., Cucu, L., Triquet, B., Bernat, G., Berger, E., Abella, J., Wartel, F., Houston, M., Santinelli, L., Kosmidis, L., Lo, C., and Maxim, D., PROARTIS: Probabilistically Analysable Real-Time Systems, Transactions on Embedded Computing Systems, no. Special Issue on Probabilistic Embedded Computing . ACM, 2012.
F. Cazorla, Quiñones, E., Vardanega, T., Cucu-Grosjean, L., Triquet, B., Berger, E. D., Abella, J., Wartel, F., Houston, M., Santinelli, L., Kosmidis, L., Lo, C., and Maxim, D., PROARTIS: Probabilistically Analysable Real-Time Systems, ACM Transactions on Embedded Computing Systems. 2012.
J. Bueno-Hedo, Planas, J., Duran, A., Badia, R. M., Martorell, X., Ayguadé, E., and Labarta, J., Productive Programming of GPU Clusters with OmpSs, 26th IEEE International Parallel and Distributed Processing Symposium (IPDPS 2012). IEEE Computer Society, pp. 557-568, 2012.
P. Bellens, Programming Model and Run-Time Optimizations for the Cell/B.E., Universitat Politècnica de Catalunya (UPC), 2012.
J. M. Baldasano, Projecte ESCAT: Objectius, Metodologia i necessitats computacionals, Generalitat de Catalunya, vol. . Generalitat de Catalunya, 23 October, 2012. Barcelona. Spain, 2012.
S. Grosdidier and Fernández-Recio, J., Protein-protein docking and hot-spot prediction for drug discovery., Current pharmaceutical design, vol. 18, no. 30. pp. 4607-18, 2012.
L. Pérez-Cano, Jiménez-García, B., and Fernández-Recio, J., A protein-RNA docking benchmark (II): extended set from experimental and homology modeling data., Proteins, vol. 80, no. 7. pp. 1872-82, 2012.
A. Costa, Folch, A., Macedonio, G., Giaccio, B., Isaia, R., and Smith, V. C., Quantifying volcanic ash dispersal and impact of the Campanian Ignimbrite super-eruption, Geophysical Research Letters, vol. 39. p. n/a–n/a, 2012.
G. G. Buffett, Pelegrí, J. L., de la Puente, J., and Carbonell, R., Real time visualization of thermohaline finestructure using Seismic Offset Groups, Methods in Oceanography. pp. 2211-1220, 2012.
J. C. Sancho, Jokanovic, A., and Labarta, J., Reducing the Impact of Soft Errors on Fabric-based Collective Communications, Proceedings of the 2011 International Conference on Parallel Processing - Volume 2. Springer-Verlag, Berlin, Heidelberg, pp. 262–271, 2012.
S. González, Montserrat, B., Sánchez, F., Puiggros, M., Blanco, E., Ramirez, A., and Torrents, D., ReLA, a local alignment search tool for the identification of distal and proximal gene regulatory regions and their conserved transcription factor binding sites, Bioinformatics. 2012.
I. Blanquer, Bratsche, G., and Lezzi, D., Requirements of Scientific Applications in Cloud Offerings, Proceedings of 6th Iberian Grid Infrastructure Conference. 2012.
C. Juiz, Kounev, S., Gilly, K., Brosig, F., and Nou, R., Resilience Assessment and Evaluation of Computing Systems, in Dagstuhl Seminar 10292, K. Wolter, Avritzer, A., Vieira, M., and van Moorsel, A. Springer-Verlag Berlin Heidelberg, 2012.
J. Ejarque, Álvarez, J., Sirvent, R., and Badia, R. M., Resource Allocation for Cloud Computing: A Semantic Approach, in Open Source Cloud Computing Systems: Practices and Paradigms, IGI Global, 2012, pp. 90-112.
A. Folch, A review of tephra transport and dispersal models: Evolution, current status, and future perspectives, Journal of Volcanology and Geothermal Research, vol. 235 - 236. pp. 96 - 115, 2012.
A. Julià, Tortosa, R., Hernanz, J. M., Cañete, J. D., Fonseca, E., Ferrándiz, C., Unamuno, P., Puig, L., Fernández-Sueiro, J. L., Sanmartí, R., Rodríguez, J., Gratacós, J., Dauden, E., Sánchez-Carazo, J. L., López-Estebaranz, J. L., Moreno-Ramírez, D., Queiró, R., Montilla, C., Torre-Alonso, J. C., Pérez-Venegas, J. J., Vanaclocha, F., Herrera, E., Muñoz-Fernández, S., González, C., Roig, D., Erra, A., Acosta, I., Fernández-Nebro, A., Zarco, P., Alonso, A., López-Lasanta, M., García-Montero, A., Gelpí, J. L., Absher, D., and Marsal, S., Risk variants for psoriasis vulgaris in a large case-control collection and association with clinical subphenotypes., Human molecular genetics, vol. 21, no. 20. pp. 4549-57, 2012.
A. Hernández-Ortega, Lucas, F., Ferreira, P., Medina, M., Guallar, V., and Martínez, A. T., Role of active site histidines in the two half-reactions of the aryl-alcohol oxidase catalytic cycle., Biochemistry, vol. 51, no. 33. pp. 6595-608, 2012.
N. Alexandrov, Alexandrov, V., and Ramírez Velarde, R., The Role of Computational Science and Emerging Technologies in the Natural Sciences Education at University Level, Procedia Computer Science, vol. 9. Elsevier, pp. 1789–1798, 2012.
P. Wittek and Rubio-Campillo, X., Scalable Agent-based Modelling with Cloud HPC Resources for Social Simulations, 2012 IEEE 4th International Conference on Cloud Computing Technology and Science. pp. 355-362, 2012.
J. C. Sancho, Jokanovic, A., and Labarta, J., Scalable Fault-tolerant Interconnection Networks for Large-scale Computing Systems, {Workshop on Design for Reliability in conjunction with the International Conference on High-Performance and Embedded Architectures and Compilers}. {FP7}, Paris, France, 2012.
P. Wittek and Cucchietti, F. M., A Second-Order Distributed Trotter-Suzuki Solver with a Hybrid Kernel. 2012.
O. Jorba, Soret, A., Serradell, K., Tolosana-Delgado, R., Sánchez-Arcilla, A., and Baldasano, J. M., Sensitivity of surface atmospheric circulations to sea surface roughness at the western Mediterranean Sea: high-resolution WRF-WAM coupling model application, 12th EMS Annual Meeting & 9th European Conference on Applied Climatology (ECAC), vol. . European Meteorological Society (EMS), 10-14 September, 2012. Łódź, Poland, 2012.
J. Ejarque, Álvarez, J., Sirvent, R., and Badia, R. M., Service Orchestration on a Heterogeneous Cloud Federation, Computing and Informatics, vol. 31. pp. 45–60, 2012.
S. Muscella, Ferguson, N., Parker, S., Badia, R. M., Lezzi, D., Wallom, D., Mazzucato, M., Ronchieri, E., Ahtes, J., Watzl, J., Walker, M., Borras, J., and Daffara, C., SIENA: Grid and Cloud Standards for e-Science and beyond, Proceedings of Science (PoS). 2012.
X. Rubio-Campillo, Cela, J. M., and Hernández, F. X., Simulating archaeologists? Using agent-based modelling to improve battlefield excavations, Journal of Archaeological Science, no. 39. pp. 347-356, 2012.
A. Rico, Cabarcas, F., Villavieja, C., Pavlovic, M., Vega, A., Etsion, Y., Ramirez, A., and Valero, M., On the Simulation of Large-scale Architectures Using Multiple Application Abstraction Levels, ACM Transactions on Architecture and Code Optimization, vol. 8. p. 36, 2012.
E. Terradellas, Baldasano, J. M., Cuevas, E., and Benincasa, F., Sistema de evaluación y aviso de tormentas de polvo y arena (WMO SDS-WAS), XXXII Jornadas Científicas Asociación Meteorológica Española “Meteorología y Calidad del Aire”, vol. . Asociación Meteorológica Española (AME), 28-30 May, 2012. Alcobendas, Madrid. Spain, 2012.
P. Pessolani, Cortes, T., Gonnet, S., and Tinetti, F. G., Sistema de Virtualización con Recursos Distribuidos, Workshop de Investigadores en Ciencias de la Computación. 2012.
I. H. Moal and Fernández-Recio, J., SKEMPI: a Structural Kinetic and Energetic database of Mutant Protein Interactions and its use in empirical models., Bioinformatics (Oxford, England), vol. 28, no. 20. pp. 2600-7, 2012.
E. M. Novoa, de Pouplana, L. R., and Orozco, M., Small Molecule Docking from Theoretical Structural Models, Computational Modeling of Biological Systems Biological and Medical Physics, Biomedical Engineering. pp. 75-95 , 2012.
A. Morari, Boneti, C., Cazorla, F., Gioiosa, R., Cher, C. - Y., Buyuktosunoglu, A., Bose, P., and Valero, M., SMT Malleability in IBM POWER5 and POWER6 Processors, IEEE Transactions on Computers, vol. 00. 2012.
N. Vujic, Software Caching Techniques and Hardware Optimizations for On-Chip Local Memories, 2012.
V. Sicardi, Arévalo, G., Gassó, S., and Baldasano, J. M., Spatial and temporal bias correction to enhance air quality forecast over Spain, 9th European Geosciences Union Conference (EGU) General Assembly. Geophysical Research Abstracts, vol. 14. European Geosciences Union (EGU), 22-27 April, 2012. Viena, Austria, 2012.
M. T. Pay, Jiménez-Guerrero, P., Jorba, O., Basart, S., Querol, X., Pandolfi, M., and Baldasano, J. M., Spatio-temporal variability of concentrations and speciation of particulate matter across spain in the caliope modeling system, Atmospheric Environment, vol. 46, no. January 2012. PERGAMON-ELSEVIER SCIENCE LTD, ENGLAND, pp. 376-396, 2012.
A. Hernández-Ortega, Ferreira, P., Merino, P., Medina, M., Guallar, V., and Martínez, A. T., Stereoselective Hydride Transfer by Aryl-Alcohol Oxidase, a Member of the GMC Superfamily., Chembiochem : a European journal of chemical biology. 2012.
A. Arcella, Portella, G., Ruiz, M. L., Eritja, R., Vilaseca, M., Gabelica, V., and Orozco, M., Structure of triplex DNA in the gas phase., Journal of the American Chemical Society, vol. 134, no. 15. pp. 6596-606, 2012.
D. Meister, Kaiser, J., Brinkmann, A., Cortes, T., Kuhn, M., and Kunkel, J., A Study on Data Deduplication in HPC Storage Systems, Supercomputing 2012. 2012.
Í. Goiri, Julià, F., Fitó, O., Macías, M., and Guitart, J., Supporting CPU-based Guarantees in Cloud SLAs via Resource-level QoS Metrics, Future Generation Computer Systems, vol. 28, no. 8. pp. 1295-1302, 2012.
V. Gajinov, Stipić, S., Unsal, O. S., Harris, T., Ayguadé, E., and Cristal, A., Supporting Stateful Tasks in a Dataflow Graph, Proceedings of the 21st international conference on Parallel architectures and compilation techniques. ACM, pp. 435–436, 2012.
R. M. Badia, Labarta, J., Marjanovic, V., F., M. A., Mayo, R., Quintana-Ortí, E. S., and Reyes, R., Symmetric Rank-k Update on Clusters of Multicore Processors with SMPSs, in Applications, Tools and Techniques on the Road to Exascale Computing, IOS Press, 2012.
R. Bertran, Buyuktosunoglu, A., Gupta, M. S., González, M., and Bose, P., Systematic Energy Characterization of CMP/SMT Processor Systems via Automated Micro-Benchmarks, International Symposium on Microarchitecture. 2012.
R. Bertran, Gonzalez Tallada, M., Martorell, X., Navarro, N., and Ayguadé, E., A Systematic Methodology to Generate Decomposable and Responsive Power Models for CMPs, Computers, IEEE Transactions on, vol. PP. IEEE Computer Society, Los Alamitos, CA, USA, p. 1, 2012.
S. Stipić, Tomić, S., Zyulkyarov, F., Cristal, A., Ünsal, O. S., and Valero, M., TagTM - accelerating STMs with hardware tags for fast meta-data access, DATE. pp. 39-44, 2012.

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