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E. Fernández, Torrents, D., Chillarón, J., Del Rio, M., Zorzano, A., and Palacín, M., Basolateral LAT-2 has a major role in the transepithelial flux of L-cystine in the renal proximal tubule cell line OK.. J Am Soc Nephrol., 2003.
M. Suyama, Torrents, D., and Bork, P., BLAST2GENE: a comprehensive conversion of BLAST output into independent genes and gene fragments. Bioinformatics, 2004.
E. M. Zdobnov, Mering, V. C., Letunic, I., Torrents, D., Suyama, M., Copley, R. R., Christophides, G. K., Thomasova, D., Holt, R., Subramanian, G. M., Mueller, H. M., Dimopoulos, G., Law, J. H., Wells, M. A., Birney, E., Charlab, R., and Halpern, A. L., Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster.. Science, 2002.
J. R. Goñi, Pérez, A., Torrents, D., and Orozco, M., Determining promoter location based on DNA structure first principle calculations. Genome Biology, 8:R263, 2007.
J. R. Goñi, Fenollosa, C., Pérez, A., Torrents, D., and Orozco, M., DNAlive: a tool for the physical analysis of DNA at the genomic scale.. Bioinformatics. 24(15):1731-2. Epub 2008 Jun 9., 2008.
J. Mykkanen, Torrents, D., Pineda, M., Camps, M., ME, Y., Horelli-Kuitunen, N., Huoponen, K., Heinonen, M., Oksanen, J., Simell, O., ML, S., Zorzano, A., Palacín, M., and Aula, P., Functional analysis of novel mutations in y(+)LAT-1 amino acid transporter gene causing lysinuric protein intolerance (LPI).. Hum Mol Genet., 2000.
N. Reig, del Rio, C., Casagrande, F., Ratera, M., Gelpí, J. L., Torrents, D., Henderson, P. J. F., Xie, H., Baldwin, S. A., Zorzano, A., Fotiadis, D., and Palacín, M., Functional and structural characterization of the first prokaryotic member of the L-amino acid transporter (LAT) family: a model for APC transporters., The Journal of biological chemistry, vol. 282, no. 18. pp. 13270-81, 2007.
R. G. S. P. Consortium and Torrents, D., Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature, 2004.
D. Torrents, Suyama, M., Zdobnov, E. M., and Bork, P., A genome-wide survey of human pseudogenes. Genome Res., 2003.
R. H. Waterston, Hillier, L. W., Fulton, L. A., Fulton, R. S., Graves, T. A., Pepin, K. H., Bork, P., Suyama, M., Torrents, D., Chinwalla, A. T., Mardis, E. R., McPherson, J. D., and Wilson, R. K., The human genome: genes, pseudogenes, and variation on chromosome 7. Cold Spring Harb Symp Quant Biol., 2003.
M. Suyama, Harrington, E. D., Bork, P., and Torrents, D., Identification and analysis of genes and pseudogenes within duplicated regions in the human and mouse genomes. PLoS Comput Biol, 2006.
D. Torrents, Estevez, R., Pineda, M., Fernández, E., Lloberas, J., Shi, Y. B., Zorzano, A., and Palacín, M., Identification and characterization of a membrane protein (y+L amino acid transporter-1) that associates with 4F2hc to encode the amino acid transport activity y+L. A candidate gene for lysinuric protein intolerance. J Biol Chem., 1998.
E. Fernández, Torrents, D., Zorzano, A., Palacín, M., and Chillarón, J., Identification and functional characterization of a novel low affinity aromatic-preferring amino acid transporter (arpAT). One of the few proteins silenced during primate evolution. J Biol Chem., 2005.
M. Pineda, Fernández, E., Torrents, D., Estevez, R., López, C., Camps, M., Lloberas, J., Zorzano, A., and Palacín, M., Identification of a membrane protein, LAT-2, that Co-expresses with 4F2 heavy chain, an L-type amino acid transport activity with broad specificity for small and large zwitterionic amino acids.. J Biol Chem., 1999.
D. Torrents, Mykkanen, J., Pineda, M., Feliubadalo, L., Estevez, R., De Cid, R., Sanjurjo, P., Zorzano, A., Nunes, V., Huoponen, K., Reinikainen, A., Simell, O., ML, S., Aula, P., and Palacín, M., Identification of SLC7A7, encoding y+LAT-1, as the lysinuric protein intolerance gene. Nat Genet., 1999.
M. G. S. Consortium and Torrents, D., Initial sequencing and comparative analysis of the mouse genome.. Nature, 2002.
L. Feliubadalo, Font, M., Purroy, J., Rousaud, F., Estivill, X., Nunes, V., Reig, N., Fernández, E., Estevez, R., Pineda, M., Torrents, D., Camps, M., Lloberas, J., Zorzano, A., and Palacín, M., Non-type I cystinuria caused by mutations in SLC7A9, encoding a subunit (bo,+AT) of rBAT.. Nat Genet., 1999.
M. Suyama, Torrents, D., and Bork, P., PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res, 2006.
F. Casagrande, Ratera, M., Schenk, A. D., Chami, M., Valencia, E., López, J. M., Torrents, D., Engel, A., Palacín, M., and Fotiadis, D., Projection structure of a member of the amino acid/polyamine/organocation transporter superfamily.. J Biol Chem. 283(48):33240-8. Epub 2008 Sep 25., 2008.
E. M. Zdobnov, Campillos, M., Harrington, E. D., Torrents, D., and Bork, P., Protein coding potential of retroviruses and other transposable elements in vertebrate genomes. Nucleic Acids Res, 2005.
C. Quijano, Tomancak, P., Lopez-Marti, J., Suyama, M., Bork, P., Milan, M., Torrents, D., and Manzanares, M., Selective maintenance of Drosophila tandemly-arranged duplicated genes. Genome Biology, 2008.
I. C. G. S. Consortium and Torrents, D., Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature, 2004.
M. Torras-Llort, Torrents, D., Soriano-Garcia, J. F., Gelpí, J. L., Estevez, R., Ferrer, R., Palacín, M., and Moreto, M., Sequential amino acid exchange across b(0,+)-like system in chicken brush border jejunum.. J Membr Biol., 2001.
F. Casals, Ferrer-Admetlla, A., Chillarón, J., Torrents, D., Palacín, M., and Bertranpetit, J., Is there selection for the pace of successive inactivation of the arpAT gene in primates?. J Mol Evol. 67(1):23-8. Epub 2008 Jun 20., 2008.
X. S. Puente, Pinyol, M., Quesada, V., Conde, L., Ordóñez, G. R., Villamor, N., Escaramis, G., Jares, P., Beà, S., González-Díaz, M., Bassaganyas, L., Baumann, T., Juan, M., López-Guerra, M., Colomer, D., Tubío, J. M. C., López, C., Navarro, A., Tornador, C., Aymerich, M., Rozman, M., Hernández, J. M., Puente, D. A., Freije, J. M. P., Velasco, G., Gutiérrez-Fernández, A., Costa, D., Carrió, A., Guijarro, S., Enjuanes, A., Hernández, L., Yagüe, J., Nicolás, P., Romeo-Casabona, C. M., Himmelbauer, H., Castillo, E., Dohm, J. C., de Sanjosé, S., Piris, M. A., de Alava, E., San Miguel, J., Royo, R., Gelpí, J. L., Torrents, D., Orozco, M., Pisano, D. G., Valencia, A., Guigó, R., Bayés, M., Heath, S., Gut, M., Klatt, P., Marshall, J., Raine, K., Stebbings, L. A., Futreal, A. P., Stratton, M. R., Campbell, P. J., Gut, I., López-Guillermo, A., Estivill, X., Montserrat, E., López-Otín, C., and Campo, E., Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia., Nature, vol. 475, no. 7354. pp. 101-5, 2011.