Publications

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Author Title Type [ Year(Asc)]
2011
K. Ahmed and Alexandrov, V., Identity and Access Management in Cloud Computing, in in Cloud Computing for Enterprise Architectures, Mahmood Zaigham and Hill Richard (Eds.), vol. XVI, no. Part 2, Springer, 2011, pp. 115-133.
V. Subotic, Sancho, J. C., Labarta, J., and Valero, M., The Impact of Application's Micro-Imbalance on the Communication-Computation Overlap, Parallel, Distributed and Network-Based Processing (PDP), 2011 19th Euromicro International Conference on. pp. 191-198, 2011.
M. Gonçalves, Chang, W. L., Dabdub, D., Jorba, O., and Baldasano, J. M., The Impact of HONO Sources in the Air Quality of the Iberian Peninsula, GLOREAM-EURASAP 2011 Workshop on global and regional atmospheric modelling. National Environmental Research Institute , Aarhus University, 26–28 January 2011. Copenhagen, Denmark, 2011.
T. Hussain, Pericàs, M., Nacho, N., and Ayguadé, E., Implementation of a Reverse Time Migration Kernel using the HCE High Level Synthesis Tool, Field Programmable Technology. Delhi, India, pp. 1–8, 2011.
M. T. Pay, Jiménez-Guerrero, P., and Baldasano, J. M., Implementation of resuspension from paved roads for the improvement of CALIOPE air quality system in Spain, Atmospheric Environment, vol. 45, no. 3. Atmospheric Environment 45 (3): 802-807, pp. 802-807, 2011.
R. de la Cruz, Calmet, H., and Houzeaux, G., Implementing a XDMF/HDF5 Parallel File System in Alya, in Whitepaper of PRACE-1IP project, 2011.
B. Eguzkitza, Houzeaux, G., and Vázquez, M., An Implicit and Parallel Chimera Method, 20th International Conference on Domain Decomposition Methods. La Jolla (USA), 2011.
B. Eguzkitza, Houzeaux, G., Aubry, R., Peredo, O., Owen, H., and Vázquez, M., An Implicit and Parallel Chimera Type Domain Decomposition Method, PARCFD2011. Barcelona (Spain), 2011.
X. Sáez, Soba, A., Sánchez, E., Kleiber, R., Castejón, F., and Cela, J. M., Improvements of the particle-in-cell code EUTERPE for petascaling machines, Computer Physics Communications, vol. 182. pp. 2047 - 2051, 2011.
M. Alvanos, Tiotto, E., Farreras, M., and Martorell, X., Improving communication in PGAS environments: Data prefetching and aggregation in UPC, 20th Annual International Conference hosted by the Centre for Advanced Studies & Research (CASCON 2011). ACM Digital library, Toronto, ON, Canada, 2011.
V. Guallar, Induced Fit Modelling with Monte Carlo techniques: protein Energy Landscape Exploration, 11th Structure based Drug design (SBDD), Boston (USA) . 2011.
J. L. Gelpí, Infraestructura de Web Services y Supercomputación, Tutoriales Formativos en Biomedicina Computacional. : Lestrove (Coruña) (ESPANYA). 2011.
O. Fitó and Guitart, J., Initial Thoughts on Business-driven IT Management Challenges in Cloud Computing Providers, 6th IFIP/IEEE International Workshop on Business Driven IT Management (BDIM'11) (Short Paper). Dublin, Ireland, pp. 1066-1069, 2011.
V. Gajinov, Cristal, A., Milovanovic, M., Ayguadé, E., Unsal, O., and Valero, M., Integrating dataflow abstractions into transactional memory, Systems for Future Multi-Core Architectures (SFMA'11) . 2011.
V. Gajinov, Milovanovic, M., Unsal, O., Cristal, A., Ayguadé, E., and Valero, M., Integrating Dataflow Abstractions into Transactional Memory, First Workshop on Systems for Future Multi-Core Architectures (SFMA'11). Salzburg, Austria, pp. 1–6, 2011.
Í. Goiri, Le, K., Guitart, J., Torres, J., and Bianchini, R., Intelligent Placement of Datacenters for Internet Services, 31th International Conference on Distributed Computing Systems (ICDCS'11). Minneapolis, MN, USA, pp. 131-142, 2011.
G. Kestor, Dalessandro, L., Cristal, A., Scott, M. L., and Unsal, O., Interchangeable Back Ends for STM Compilers, 6th ACM SIGPLAN Workshop on Transactional Computing (TRANSACT). San Jose Convention Center, United States, 2011.
L. Valentova, Gallovic, F., and de la Puente, J., Inversion of Love wave traveltimes in Czech Republic using adjoint method, Geophysical Research Abstracts. EGU, pp. EGU2011-6858, 2011.
J. Strassburg and Alexandrov, V., Investigating Scaling Behavior of Monte Carlo Codes for Dense Matrix Inversion, Supercomputing 2011, ScalA Workshop, ACM Companion Volume Proceedings. ACM, pp. 33-36, 2011.
J. Ejarque, Micsik, A., Sirvent, R., Pallinger, P., Kovacs, L., and Badia, R. M., Job Scheduling with License Reservation: A Semantic Approach, 19th Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP), 2011 . IEEE, pp. 47–54, 2011.
P. Lafortune, Aris, R., Vázquez, M., Houzeaux, G., and Jerusalem, A., Large Scale Electro Mechanical cardiac Simulations, 2nd International Conference on Mathematical and Computational Biomedical Engineering. Washington D.C. (USA), 2011.
P. Lafortune, Aris, R., Vázquez, M., Houzeaux, G., and Jerusalem, A., Large Scale Electro Mechanical cardiac Simulations, 2st International Conference on Mathematical and Computational Biomedical Engineering. Washington D.C. (USA), 2011.
M. Álvarez, Bofill, P., Sánchez, F., and Farreras, M., Learning the Principles of Parallel Computing with Games, Active Learning in Engineering Education Workshop 2011. 2011.
N. Rajovic, Puzovic, N., Vilanova, L., Villavieja, C., and Ramirez, A., The low-power Architecture Approach Towards Exascale Computing, Workshop on Latest Advances in Scalable Algorithms for Large-Scale Systems (ScalA). 2011.
L. Helft, Reddy, V., Chen, X., Koller, T., Federici, L., Fernández-Recio, J., Gupta, R., and Bent, A., LRR conservation mapping to predict functional sites within protein leucine-rich repeat domains., PloS one, vol. 6, no. 7. p. e21614, 2011.
P. Bellens, Pérez, J. M., Badia, R. M., and Labarta, J., Making the Best of Temporal Locality: Just-in-Time Renaming and Lazy Write-Back on the Cell/B.E., International Journal of High Performance Computing Applications, vol. 25, no. 2. 2011.
M. Pavlovic, Etsion, Y., and Ramirez, A., On the Memory System Requirements of Future Scientific Applications: Four Case Studies., 2011 IEEE International Symposium on Workload Characterization. pp. 159-170, 2011.
R. Ferrer, Royuela, S., Caballero, D., Duran, A., Martorell, X., and Ayguadé, E., Mercurium: Design Decisions for a S2S Compiler, Cetus Users and Compiler Infastructure Workshop in conjunction with PACT 2011. 2011.
P. Dadvand, Rossi, R., Gil, M., Martorell, X., Juanpere, E., Ildelsohn, S. R., and Oñate, E., Migration of a Generic Multi-Physics Framework to HPC Environments, 23rd International Conference on Parallel Computational Fluid Dynamics. 2011.
F. Wallrap, Mixed Quantum and classical simulation techniques for zapping eletron transfer in proteins, 2011.
K. Haustein, Pérez, C., Jorba, O., Baldasano, J. M., Janjic, Z., Black, T., Nickovic, S., Washington, R., Todd, M. C., and Govaerts, Y., A model for prediction of mineral dust from meso to global scales: Regional experiments for North Africa, 8th European Geosciences Union Conference (EGU) General Assembly. Geophysical Research Abstracts, vol. 13. European Geosciences Union (EGU), 3-8 April, 2011. Viena, Austria, 2011.
J. M. Baldasano, Pay, M. T., Mailler, S., Jiménez-Guerrero, P., and Gassó, S., Model inter-comparison of CMAQ and CHIMERE in the framework of CALIOPE air quality project, 10th Annual CMAS Conference. US-EPA/CMAS, October 24-26, 2011 Chapel Hill, NC (USA), 2011.
J. L. Gelpí, MoDEL. Molecular Dynamics Extended Library, nDDB Meeting - Grenoble - France. nDDB Meeting - Grenoble - France, 2011.
J. M. Baldasano, Modelización de la calidad del aire: Sistema CALIOPE, Seminário Ibérico da Qualidade do Ar. Agência Portuguesa do Ambiente (APA) and Ministerio de Medio Ambiente, y Medio Rural y Marino (MARM), 28 June 2011. Lisbon, Portugal, 2011.
A. Hernández-Ortega, Lucas, F., Ferreira, P., Medina, M., Guallar, V., and Martínez, A. T., Modulating O2 reactivity in a fungal flavoenzyme: involvement of aryl-alcohol oxidase Phe-501 contiguous to catalytic histidine., The Journal of biological chemistry, vol. 286, no. 47. pp. 41105-14, 2011.
L. Kowalczyk, Ratera, M., Paladino, A., Bartoccioni, P., Errasti-Murugarren, E., Valencia, E., Portella, G., Bial, S., Zorzano, A., Fita, I., Orozco, M., Carpena, X., Vázquez-Ibar, J. L., and Palacín, M., Molecular basis of substrate-induced permeation by an amino acid antiporter., Proceedings of the National Academy of Sciences of the United States of America, vol. 108, no. 10. pp. 3935-40, 2011.
J. Strassburg, Alexandrov, V., and Martel, G. C., Monte Carlo Scalable Algorithms for Computational Finance, Procedia Computer Science, vol. 4. Elsevier, pp. 1708-1715, 2011.
A. Fries, Portell, J., Isasi, Y., Castañeda, J., Sirvent, R., and Taboada, G. L., MPI-based Solution for Efficient Data Access in Java HPC, INFOCOMP 2011, The First International Conference on Advanced Communications and Computation. pp. 149–154, 2011.
Í. Goiri, Guitart, J., and Torres, J., Multifaceted Resource Management on Virtualized Providers, 2011.
A. Schiller, Sutmann, G., Martinell, L., Bellens, P., and Badia, R. M., Multiparticle Collision Dynamics on the Cell Broadband Engine using CellSs, Proc. of the Second International Conference on Parallel, Distributed, Grid and Cloud Computing for Engineering. 2011.
A. N. Naganathan and Orozco, M., The native ensemble and folding of a protein molten-globule: functional consequence of downhill folding., Journal of the American Chemical Society, vol. 133, no. 31. pp. 12154-61, 2011.
B. P. Cossins, Jacobson, M. P., and Guallar, V., A new view of the bacterial cytosol environment., PLoS computational biology, vol. 7, no. 6. p. e1002066, 2011.
O. Jorba, Pérez, C., Haustein, K., Janjic, Z., Baldasano, J. M., Dabdub, D., Badia, A., and Spada, M., The NMMB/BSC-CHEM online chemical weather prediction system: current status of development and feedback interactions, 8th European Geosciences Union Conference (EGU) General Assembly. Geophysical Research Abstracts, vol. 13. European Geosciences Union (EGU), 3-8 April, 2011. Viena, Austria, 2011.
O. Jorba, Pérez, C., Haustein, K., Janjic, Z., Baldasano, J. M., Dabdub, D., Badia, A., and Spada, M., The NMMB/BSC-CTM: a multiscale online chemical weather prediction system, 14th Conference on Harmonisation within Atmospheric Dispersion Modelling for Regulatory Purposes (HARMO 14), vol. 1. Environmental Technology Laboratory, Department of Mechanical Engineering, University of West Macedonia, Greece, Kos Island, Greece, pp. 345-349, 2011.
N. Poggi, Carrera, D., Gavaldà, R., and Ayguadé, E., Non-intrusive Estimation of QoS Degradation Impact on E-commerce User Satisfaction, Network Computing and Applications (NCA), 2011 10th IEEE International Symposium on. IEEE, pp. 179–186, 2011.
J. M. Baldasano, Noves Evidèncias sobre el Canvi Climàtic, Aula de Humanidades. Hospital del valle Hebrón, 24 May 2011. Barcelona, Spain, 2011.
F. Raimondi, Portella, G., Orozco, M., and Fanelli, F., Nucleotide binding switches the information flow in ras GTPases., PLoS computational biology, vol. 7, no. 3. p. e1001098, 2011.
F. Raimondi, Portella, G., Orozco, M., and Fanelli, F., Nucleotide switches the information flow in Ras GTPases. In Press, 2011.
O. Flores and Orozco, M., nucleR: a package for non-parametric nucleosome positioning., Bioinformatics (Oxford, England), vol. 27, no. 15. pp. 2149-50, 2011.
D. J. Doorly, Houzeaux, G., Taylor, D. J., Calmet, H., and Vázquez, M., Numerical simulation of air flow in the large airways, Submitted to Computers & Fluids. 2011.

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