Publications

Export 2433 results:
Author Title Type [ Year(Asc)]
2011
F. Raimondi, Portella, G., Orozco, M., and Fanelli, F., Nucleotide switches the information flow in Ras GTPases. In Press, 2011.
O. Flores and Orozco, M., nucleR: a package for non-parametric nucleosome positioning., Bioinformatics (Oxford, England), vol. 27, no. 15. pp. 2149-50, 2011.
D. J. Doorly, Houzeaux, G., Taylor, D. J., Calmet, H., and Vázquez, M., Numerical simulation of air flow in the large airways, Submitted to Computers & Fluids. 2011.
H. Talebi, Samaniego, C., Samaniego, E., and Rabczuk, T., On the numerical stability and mass-lumping schemes for explicit enriched meshfree methods, IJNME. 2011.
N. Markovic, Nemirovsky, D., González, R., Unsal, O., Valero, M., and Cristal, A., Object Oriented execution Model (OOM), New Directions in Computer Architecture (NDCA-2). San Jose, California, United States, 2011.
N. Markovic, Nemirovsky, D., González, R., Ünsal, O. S., Valero, M., and Cristal, A., Object Orienteed Execution Model (OOM), 2nd Workshop on New Directions in Computer Architecture (NDCA-2) Held in Conjunction with the 38th International Symposium on Computer Architecture (ISCA-38). San Jose, California, Sunday June 5th, 2011.
A. Duran, Ayguadé, E., Badia, R. M., Labarta, J., Martinell, L., Martorell, X., and Planas, J., OmpSs: A PROPOSAL FOR PROGRAMMING HETEROGENEOUS MULTI-CORE ARCHITECTURES, Parallel Processing Letters, vol. 21, no. 2. pp. 173-193, 2011.
O. Jorba, Pérez, C., Haustein, K., Janjic, Z., Baldasano, J. M., Dabdub, D., Badia, A., and Spada, M., Online air quality developments undertaken within the NMMB multiscale model at the Barcelona Supercomputing Center, 3rd International Workshop on Air Quality Forecasting Research (IWAQFR), vol. . Air Resources Laboratory of NOAA, November 29 - December 1, 2011, Bolger Center, Potomac, MD, 2011.
Q. Liu, Moretó, M., Abella, J., and Cazorla, F., Online Performance Prediction in Processors with DVFS Capabilities, ACACES 2011. Poster Abstracts. Advanced Computer Architecture and Compilation for Embedded Systems. 2011.
M. Hanzich, Hernández, P., Giné, F., Solsona, F., and Lérida, J. L., On/Off-Line Prediction Applied to Job Scheduling on Non-Dedicated NOWs, Journal of Computer Science and Technology, vol. 26 (1). pp. 99-116, 2011.
J. Alonso, Goiri, Í., Guitart, J., Gavaldà, R., and Torres, J., Optimal Resource Allocation in a Virtualized Software Aging Platform with Software Rejuvenation, 22th IEEE International Symposium on Software Reliability Engineering (ISSRE'11). Hiroshima, Japan, pp. 250-259, 2011.
R. Ferrer, Planas, J., Bellens, P., Duran, A., González, M., Martorell, X., Badia, R. M., Ayguadé, E., and Labarta, J., Optimizing the Exploitation of Multicore Processors and GPUs with OpenMP and OpenCL, Lecture Notes in Computer Science, vol. 6548/2011. Springer-Verlag Berlin Heidelberg, pp. 215-229, 2011.
J. Ejarque, Álvarez, J., Sirvent, R., and Badia, R. M., Orchestrating Services on a Public and Private Cloud Federation, 5th Iberian Gird Infrastructure Conference Proceedings. pp. 61-72, 2011.
F. Rubio, Hanzich, M., Aris, R., Vázquez, M., and Houzeaux, G., Parallel Computational Electrophysiology in NVIDIA GPUs, 2st International Conference on Mathematical and Computational Biomedical Engineering. Washington D.C. (USA), 2011.
B. Eguzkitza, Houzeaux, G., Aubry, R., and Vázquez, M., A Parallel coupling strategy for the Chimera and Domain Decomposition methods in Computational Mechanics, Computers & Fluids, vol. Submitted. 2011.
J. Koldan, Puzyrev, V., Cela, J. M., de la Puente, J., and Ortigosa, F., A parallel finite-element method for 3-D marine controlled-source electromagnetic forward modeling, Global Meeting Abstracts, vol. 15. SEG, pp. 12-12, 2011.
C. Samaniego, Houzeaux, G., and Vázquez, M., A Parallel Fluid-Particle Solver, Congresso de Métodos Numéricos em Engenharia - CMNE 2011. Coimbra (Portugal), 2011.
C. Samaniego, Houzeaux, G., and Vázquez, M., A Parallel Fluid-Particle Solver, 11th U.S. National Congress on Computational Mechanics. Minneapolis (USA), 2011.
P. Bellens, Palaniappan, K., Badia, R. M., Seetharaman, G., and Labarta, J., Parallel implementation of the integral histogram, Proceedings of the 13th international conference on Advanced concepts for intelligent vision systems. Springer-Verlag, Berlin, Heidelberg, pp. 586–598, 2011.
G. Houzeaux, Vázquez, M., and de la Cruz, R., A Parallel Incompressible Navier-Stokes Solver, 16th International Conference on Finite Elements in Flow Problems (FEF 2011). Munich (Germany), 2011.
G. Houzeaux, Vázquez, M., and de la Cruz, R., A parallel Navier-Stokes incompressible flow solver, PARCFD2011. Barcelona (Spain), 2011.
A. Jackson, Reid, F., Booth, S., Hein, J., Westerholm, J., Aspnäs, A., Català, M., and Soba, A., Parallel Optimisation Strategies for Fusion Codes, Proceedings of the 19th Euromicro Conference on Parallel, Distributed and Network-based Processing (PDP). IEEE Computer Society, pp. 357-364, 2011.
G. Houzeaux, de la Cruz, R., Owen, H., and Vázquez, M., Parallel uniform mesh multiplication applied to a Navier-Stokes solver, Submitted to Computers & Fluids. 2011.
S. Isaza, Sánchez, F., Gaydadjiev, G. N., Ramirez, A., and Valero, M., Parameterizing Multicore Architectures for Multiple Sequence Alignment, 2011 International Conference on Computing Frontiers. 2011.
X. Sáez, Soba, A., Sánchez, E., Cela, J. M., and Castejón, F., Particle-In-Cell algorithms for Plasma simulations on heterogeneous architectures, Proceedings of the 19th Euromicro Conference on Parallel, Distributed and Network-based Processing (PDP). IEEE Computer Society, pp. 385-389, 2011.
R. Nou, Julià, F., Hogan, K., and Torres, J., Path to achieving a self-managed grid middleware, Future Generation Computer Systems, vol. 27. pp. 10–19, 2011.
T. Nakashima and Giménez, J., Performance Analysis and Optimization of A CFD Code on A Large-Scale Parallel Computer. ParCFD2011, Barcelona, Spain, 2011.
O. Deniz, Flores, O., Battistini, F., Pérez, A., Soler-López, M., and Orozco, M., Physical properties of naked DNA influence nucleosome positioning and correlate with transcription start and termination sites in yeast., BMC genomics, vol. 12. p. 489, 2011.
A. G. Foina, Planas, J., Badia, R. M., and Ramírez-Fernandez, F. J., P-Means, a Parallel Clustering Algorithm for a Heterogeneous Multi-Processor Environment, Proceedings of the HPCS 2011 . 2011.
J. M. Baldasano, Podem mesurar i modelitzar la qualitat de l'aire? Fiabilitat i perspectiva de millora, Jornada CECCP-RACC: "Qualitat de l'aire i transport viari a l'àrea de Barcelona. RACC, 2 May 2011. Barcelona, Spain, 2011.
F. J. Luque, Dehez,, Chipot, C., and Orozco, M., Polarization effects in molecular interactions. Wiley Interdisciplinary Reviews: Computational Molecular Science, n/a., 2011.
P. Bellens, Palaniappan, K., Badia, R. M., Seetharaman, G., and Labarta, J., A Portable Implementation of the Integral Histogram in StarSs, Proceedings of the SC11 conference. 2011.
J. Bueno, Duran, A., Martorell, X., Ayguadé, E., Badia, R. M., and Labarta, J., Poster: programming clusters of GPUs with OMPSs, Proceedings of the international conference on Supercomputing. ACM, New York, NY, USA, pp. 378–378, 2011.
J. Fernández-Recio, Prediction of protein binding sites and hot spots, WIREs Comput. Mol. Sci. , vol. 1. pp. 680-698, 2011.
C. Pons, Glaser, F., and Fernández-Recio, J., Prediction of protein-binding areas by small-world residue networks and application to docking., BMC bioinformatics, vol. 12. p. 378, 2011.
L. Margetts, McDonald, S., Lever, L. M., Calmet, H., Houzeaux, G., and Mummery, P. M., Predictive modelling of flow through porous microstructures, PARCFD2011. Barcelona (Spain), 2011.
C. Guirado, Cuevas, E., Cachorro, V. E., Mimouni, M., Zeudmi, L., Toledano, C., Alonso-Pérez, S., Basart, S., Blarel, L., Goloub, P., and Baldasano, J. M., Preliminary characterization of columnar aerosol properties (AOD-AE) at the Saharan Tamanrasset (Algeria) station, Journal Óptica Pura y Aplicada, vol. 44, no. 4. SPANISH OPTICAL SOCIETY, SPAIN, pp. 635-639, 2011.
J. Bueno, Martinell, L., Duran, A., Farreras, M., Martorell, X., Badia, R. M., Ayguadé, E., and Labarta, J., Productive Cluster Programming with OmpSs, Euro-Par 2011 Parallel Processing, vol. 6852. Springer Berlin / Heidelberg, pp. 555-566, 2011.
A. N. Naganathan and Orozco, M., The protein folding transition-state ensemble from a Gō-like model., Physical chemistry chemical physics : PCCP, vol. 13, no. 33. pp. 15166-74, 2011.
A. Solernou and Fernández-Recio, J., pyDockCG: new coarse-grained potential for protein-protein docking., The journal of physical chemistry. B, vol. 115, no. 19. pp. 6032-9, 2011.
G. Huhs, Quantenmechanik, in Quanten, Felder, Schwarze Löcher, Verlag der Technischen Universität Graz, 2011, pp. 41–59.
V. Subotic, Ferrer, R., Sancho, J. C., Labarta, J., and Valero, M., Quantifying the Potential Task-Based Dataflow Parallelism in MPI Applications, Euro-Par 2011 Parallel Processing, vol. 6852. Springer Berlin Heidelberg, pp. 39-51, 2011.
A. Morari, Gioiosa, R., Wisniewski, R., Cazorla, F., and Valero, M., A Quantitative Analysis of OS Noise. Anchorage (Alaska) USA, 2011.
S. Tomić, Cristal, A., Unsal, O., and Valero, M., Rapid Development of Error-Free Architectural Simulators using Dynamic Runtime Testing, 23rd International Symposium on Computer Architecture and High Performance Computing. Vitória, Espírito Santo, Brazil, 2011.
A. Soba, Bea, E., Houzeaux, G., Calmet, H., and Cela, J. M., Real space density functional theory and time depending density functional theory using finite/infinite element methods, Comput. Phys. Comm. 2011.
H. Owen, Houzeaux, G., Samaniego, C., and Vázquez, M., Recent ship hydrodynamics developments in the parallel two–fluid flow solver Alya, PARCFD2011. Barcelona (Spain), 2011.
T. Hussain, Pericàs, M., and Ayguadé, E., Reconfigurable Memory Controller with Programmable Pattern Support, 5th HiPEAC Workshop on Reconfigurable Computing (WRC 2011). Heraklion, Greece, pp. 55–64, 2011.
V. Daskalakis, Farantos, S. C., Guallar, V., and Varotsis, C., Regulation of electron and proton transfer by the protein matrix of cytochrome c oxidase., The journal of physical chemistry. B, vol. 115, no. 13. pp. 3648-55, 2011.
A. Miranda, Effert, S., Kang, Y., Miller, L., Brinkmann, A., and Cortes, T., Reliable and Randomized Data Distribution Strategies for Large Scale Storage Systems. 18th Annual International Conference on High Performance Computing (HiPC 2011), Bangalore, India, 2011.
A. Soba, Bea, E., and Houzeaux, G., Resolución de la ecuación de Khon-Sham mediante discretización del espacio real con elementos finitos e infinitos, AFA. Argentina, 2011.

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