Publications

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2008
Consortium, T.B. Interoperability with Moby 1.0 - It's better that sharing your toothbrush!. (2008).at <http://bib.oxfordjournals.org/cgi/reprint/bbn003?ijkey=7jMqiO6BpntmxyT&keytype=ref>
Perfumo, C., Sönmez, N., Stipić, S., Unsal, O., Cristal, A., Harris, T. & Valero, M. The limits of software transactional memory (STM): dissecting Haskell STM applications on a many-core environment. 5th Conference on Computing Frontiers 67–78 (2008).at <http://capinfo.e.ac.upc.edu/PDFs/dir06/file003457.pdf>
Perfumo, C., Sönmez, N., Stipic, S., Unsal, O., Cristal, A., Harris, T. & Valero, M. The limits of software transactional memory (STM): dissecting Haskell STM applications on a many-core environment. Computing Frontiers '08 67–78 (2008).
Jorba, O., Loridan, T., Jiménez-Guerrero, P., Pérez, C. & Baldasano, J.M. Linking the advanced research WRF meteorological model with the CHIMERE chemistry-transport model. Environmental Modelling & Software 23, 1092-1094 (2008).
Pay, M.T., Jiménez-Guerrero, P., Jorba, O., Pérez, C., Gassó, S. & Baldasano, J.M. A long-term evaluation study of the atmospheric dynamics of aerosols and gaseous species over Europe using an integrated air quality modelling system with high resolution. (2008).
Carrera, D., Steinder, M., Whalley, I., Torres, J. & Ayguadé, E. Managing SLAs of heterogeneous workloads using dynamic application placement. (2008).
Guallar, V. & Wallrapp, F. Mapping protein electron transfer pathways with QM/MM methods. Journal of the Royal Society, Interface / the Royal Society 5 Suppl 3, S233-9 (2008).
Radojkovic, P., Cakarevic, V., Verdú, J., Pajuelo, A., Gioiosa, R., Cazorla, F., Nemirovsky, M. & Valero, M. Measuring Operating System Overhead on CMT Processors. (2008).
Baldasano, J.M. Mecanismos de los Cambios Climáticos; Herramientas Matemáticas Aplicables e Incertidumbres en los Resultados. (2008).
Martí, M.A., Bidon-Chanal, A., Crespo, A., Yeh, S.-R., Guallar, V., Luque, F.J. & Estrin, D.A. Mechanism of product release in NO detoxification from Mycobacterium tuberculosis truncated hemoglobin N. Journal of the American Chemical Society 130, 1688-93 (2008).
Wang, Q., Xia, J., Guallar, V., Krilov, G. & Kantrowitz, E.R. Mechanism of thermal decomposition of carbamoyl phosphate and its stabilization by aspartate and ornithine transcarbamoylases. Proceedings of the National Academy of Sciences of the United States of America 105, 16918-23 (2008).
Gelado, I., Ramirez, A., Navarro, N. & Villavieja, C. Memory Management on Chip-MultiProcessors with on-chip Memories. Workshop on the Interaction between Operating Systems and Computer Architecture (WIOSCA'08) 1-7 (2008).
Kertész, A., Rodero, I. & Guim, F. Meta-Borkering Approaches in State-Of-The-Art Grid Resource Management. (2008).
Acosta, C., Cazorla, F., Ramirez, A. & Valero, M. MFLUSH: Handling Long-latency loads in SMT On-Chip Multiprocessors. International Conference on Parallel Processing (ICPP) 173-181 (2008).
Moreto, M., Cazorla, F., Ramirez, A. & Valero, M. MLP-aware dynamic cache partitioning. 2008 International Conference on High Performance Embedded Architectures & Compilers (HiPEAC 2008) 337-352 (2008).
Nesbit, K.J., Moreto, M., Cazorla, F., Ramirez, A., Valero, M. & Smith, J.E. Multicore Resource Management. IEEE Micro 28, 6-16 (2008).
Milovanovic, M., Ferrer, R., Gajinov, V., Unsal, O., Cristal, A., Ayguadé, E. & Valero, M. Nebelung: Execution Environment for Transactional OpenMP. International Journal of Parallel Programming 36, 326–346 (2008).
Marti, M.A., Capece, L., Bidon-Chanal, A., Crespo, A., Guallar, V., Luque, F.J. & Estrin, D.A. Nitric oxide reactivity with globins as investigated through computer simulation. Methods in enzymology 437, 477-98 (2008).
Villavieja, C., Gelado, I., Ramirez, A. & Navarro, N. On-Chip memories, the OS perspective. 5th HiPEAC Industrial Workshop (2008).
Pérez, C., Haustein, K., Janjic, Z., Jorba, O., Baldasano, J.M., Black, T. & Nickovic, S. An online mineral dust model within the global/regional NMMB: current progress and plans. (2008).
Teruel, X., Unnikrishnan, P., Martorell, X., Ayguadé, E., Silvera, R., Zhang, G. & Tiotto, E. OpenMP Tasks in IBM XL Compilers. (2008).at <http://www-927.ibm.com/ibm/cas/cascon/>
Tejedor, E., Badia, R.M., Naoumenko, P., Rivera, M. & Dalmasso, C. Orchestrating a safe functional suspension of GCM components. (2008).
Meenderinck, C., Azevedo, A., Álvarez, M., Juurlink, B. & Ramirez, A. Parallel Scalability of H.264. 1st Workshop on Programmability Issues for Multi-Core Computers (MULTIPROG) (2008).
Sánchez, F., Ramirez, A. & Valero, M. Parallelization Strategies for Smith Waterman Algorithm on CellBE. Advanced Computer Architecture and Compilation for Embedded Systems. ACACES 2008, Poster Session (2008).
Scollo, S., Folch, A. & Costa, A. A parametric and comparative study of different tephra fallout models. Journal of Volcanology and Geothermal Research 176, 199-211 (2008).
Gil, D., García-Barnés, J., Vázquez, M., Aris, R. & Houzeaux, G. Patient-Sensitive Anatomic and Functional 3D Model of the Left Ventricle. 8th World Congress on Computational Mechanics ({WCCM8}) and 5th European Congress on Computational Methods in Applied Sciences and Engineering ({ECCOMAS} 2008) (2008).
Badia, R.M., Sirvent, R., Bubak, M., Funika, W. & Machner, P. Performance monitoring of GRID superscalar with OCM-G/G-PM: Integration Issues. (2008).
Badia, R.M., Sirvent, R., Bubak, M., Funika, W. & Machner, P. Performance Monitoring of Grid Superscalar with OCM-G/G-PM: Tuning and Improvements. (2008).
Badia, R.M., Sirvent, R., Bubak, M., Funika, W. & Machner, P. Performance Monitoring of Grid Superscalar:Visualization Models. (2008).
Huoponen, K., Pérez, C., Baldasano, J.M., Tesche, M., Schladitz, A., Freudenthaler, V., Heese, B., Esselborn, M., Weinzieri, B. & Von Hoyningen-Huene, W. Performance of DREAM Dust Model during the SAMUN-I Field Campaign. (2008).
Queralt, A. & Teniente, E. A platform independent model for the electronic marketplace domain. Software and System Modeling 7, 219-235 (2008).
Alonso-Pérez, S., Cuevas, E., Pérez, C., Querol, X. & Baldasano, J.M. Positive trend of African air mass intrusions over the Subtropical Eastern North Atlantic Ocean in winter driven by the Azores high shift. (2008).
Casas-Guix, M., Badia, R.M. & Labarta, J. Prediction of Behavior of MPI Applications. (2008).
Chen, T., Zhang, T., Sura, Z., O'Brien, K., O'Brien, K. & Tallada, M.G. Prefetching Irregular References for Software Cache on Cell. (2008).at <http://www.cgo.org/cgo2008/>
Isaza, S., Sánchez, F., Gaydadjiev, G.N., Ramirez, A. & Valero, M. Preliminary Analysis of the Cell BE Processor Limitations for Sequence Alignment Applications. Embedded Computer Systems: Architectures, Modeling, and Simulation (SAMOS'08) 53-64 (2008).
Casagrande, F., Ratera, M., Schenk, A.D., Chami, M., Valencia, E., López, J.M., Torrents, D., Engel, A., Palacín, M. & Fotiadis, D. Projection structure of a member of the amino acid/polyamine/organocation transporter superfamily. (2008).
Dominguez, M., Ricart, J., Pons, J. & Rubio, F. Pulsed Digital Oscillators. Communication Systems, Networks and Digital Signal Processing, 2008. CNSDSP 2008. 6th International Symposium on 647–651 (2008).doi:10.1109/CSNDSP.2008.4610805
Todd, M.C., Bou Karam, D., Cavazos, C., Bouet, C., Heinold, B., Baldasano, J.M., Cautenet, G., Koren, I., Pérez, C., Solmon, F., Tegen, I., Tulet, P., Washington, R. & Zakey, A. Quantifying uncertainty in estimates of mineral dust flux: An intercomparison of model performance over the Bodélé Depression, northern Chad. Journal of Geophysical Research 113, 1-22 (2008).
Gonález-Férez, P., Piernas, J. & Cortes, T. The RAM Enhanced Disk Cache Project (REDCAP). (2008).
Orozco, M., Noy, A. & Pérez, A. Recent advances in the study of nucleic acids flexibility by molecular dynamics. (2008).at <http://www.ncbi.nlm.nih.gov/pubmed/18304803>
Torres, J., Carrera, D., Hogan, K., Gavaldà, R., Beltran, V. & Poggi, N. Reducing wasted resources to help achieve green data centers. (2008).
Nickovic, S. & Pérez, C. Regional Model of Atmospheric Iron Dust Transport and Deposition to the West African Atlantic Ocean. (2008).
Martí, J., Geyer, A., Folch, A. & Gottsmann, J. A review on collapse calderas modelling. (2008).
Piot, M., Jorba, O., Jiménez-Guerrero, P. & Baldasano, J.M. The Role of Lateral Boundary Conditions and Boundary Layer in air Quality Modelling System. (2008).
Ramos, A.G., Cuevas, E., Pérez, C., Baldasano, J.M., Coca, J., Redondo, A., Alonso-Pérez, S., Bistos, J.J. & Nickovic, S. Saharan dust and Bloom of Diazotrophic Cyanobacteria in the NW African Upwelling. (2008).
Álvarez, M., Ramirez, A., Martorell, X., Ayguadé, E. & Valero, M. Scalability of Macroblock-level Parallelism for H.264 Decoding. Advanced Computer Architecture and Compilation for Embedded Systems. ACACES 2008, Poster 59-62 (2008).
Boneti, C., Cazorla, F., Gioiosa, R. & Valero, M. Scheduling Real-Time Systems With Explicit Resource Allocation Processors. (2008).
Alastruey, J.J., Cazorla, F., Monreal, T., Viñals, V. & Valero, M. Selection of the Register File Size and the Resource Allocation Policy on SMT Processors. (2008).
Quijano, C., Tomancak, P., Lopez-Marti, J., Suyama, M., Bork, P., Milan, M., Torrents, D. & Manzanares, M. Selective maintenance of Drosophila tandemly-arranged duplicated genes. (2008).
Poggi, N., Moreno, T., Berral, J.L., Gavaldà, R. & Torres, J. Self-Adaptive Utility-Based Web Session Management. (2008).

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