Publications

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Author Title Type [ Year(Asc)]
2012
N. Alexandrov, Alexandrov, V., and Ramírez Velarde, R., The Role of Computational Science and Emerging Technologies in the Natural Sciences Education at University Level, Procedia Computer Science, vol. 9. Elsevier, pp. 1789–1798, 2012.
P. Wittek and Rubio-Campillo, X., Scalable Agent-based Modelling with Cloud HPC Resources for Social Simulations, 2012 IEEE 4th International Conference on Cloud Computing Technology and Science. pp. 355-362, 2012.
J. C. Sancho, Jokanovic, A., and Labarta, J., Scalable Fault-tolerant Interconnection Networks for Large-scale Computing Systems, {Workshop on Design for Reliability in conjunction with the International Conference on High-Performance and Embedded Architectures and Compilers}. {FP7}, Paris, France, 2012.
P. Wittek and Cucchietti, F. M., A Second-Order Distributed Trotter-Suzuki Solver with a Hybrid Kernel. 2012.
O. Jorba, Soret, A., Serradell, K., Tolosana-Delgado, R., Sánchez-Arcilla, A., and Baldasano, J. M., Sensitivity of surface atmospheric circulations to sea surface roughness at the western Mediterranean Sea: high-resolution WRF-WAM coupling model application, 12th EMS Annual Meeting & 9th European Conference on Applied Climatology (ECAC), vol. . European Meteorological Society (EMS), 10-14 September, 2012. Łódź, Poland, 2012.
J. Ejarque, Álvarez, J., Sirvent, R., and Badia, R. M., Service Orchestration on a Heterogeneous Cloud Federation, Computing and Informatics, vol. 31. pp. 45–60, 2012.
S. Muscella, Ferguson, N., Parker, S., Badia, R. M., Lezzi, D., Wallom, D., Mazzucato, M., Ronchieri, E., Ahtes, J., Watzl, J., Walker, M., Borras, J., and Daffara, C., SIENA: Grid and Cloud Standards for e-Science and beyond, Proceedings of Science (PoS). 2012.
X. Rubio-Campillo, Cela, J. M., and Hernández, F. X., Simulating archaeologists? Using agent-based modelling to improve battlefield excavations, Journal of Archaeological Science, no. 39. pp. 347-356, 2012.
A. Rico, Cabarcas, F., Villavieja, C., Pavlovic, M., Vega, A., Etsion, Y., Ramirez, A., and Valero, M., On the Simulation of Large-scale Architectures Using Multiple Application Abstraction Levels, ACM Transactions on Architecture and Code Optimization, vol. 8. p. 36, 2012.
E. Terradellas, Baldasano, J. M., Cuevas, E., and Benincasa, F., Sistema de evaluación y aviso de tormentas de polvo y arena (WMO SDS-WAS), XXXII Jornadas Científicas Asociación Meteorológica Española “Meteorología y Calidad del Aire”, vol. . Asociación Meteorológica Española (AME), 28-30 May, 2012. Alcobendas, Madrid. Spain, 2012.
P. Pessolani, Cortes, T., Gonnet, S., and Tinetti, F. G., Sistema de Virtualización con Recursos Distribuidos, Workshop de Investigadores en Ciencias de la Computación. 2012.
I. H. Moal and Fernández-Recio, J., SKEMPI: a Structural Kinetic and Energetic database of Mutant Protein Interactions and its use in empirical models., Bioinformatics (Oxford, England), vol. 28, no. 20. pp. 2600-7, 2012.
E. M. Novoa, de Pouplana, L. R., and Orozco, M., Small Molecule Docking from Theoretical Structural Models, Computational Modeling of Biological Systems Biological and Medical Physics, Biomedical Engineering. pp. 75-95 , 2012.
A. Morari, Boneti, C., Cazorla, F. J., Gioiosa, R., Cher, C. - Y., Buyuktosunoglu, A., Bose, P., and Valero, M., SMT Malleability in IBM POWER5 and POWER6 Processors, IEEE Transactions on Computers, vol. 00. 2012.
N. Vujic, Software Caching Techniques and Hardware Optimizations for On-Chip Local Memories, 2012.
V. Sicardi, Arévalo, G., Gassó, S., and Baldasano, J. M., Spatial and temporal bias correction to enhance air quality forecast over Spain, 9th European Geosciences Union Conference (EGU) General Assembly. Geophysical Research Abstracts, vol. 14. European Geosciences Union (EGU), 22-27 April, 2012. Viena, Austria, 2012.
M. T. Pay, Jiménez-Guerrero, P., Jorba, O., Basart, S., Querol, X., Pandolfi, M., and Baldasano, J. M., Spatio-temporal variability of concentrations and speciation of particulate matter across spain in the caliope modeling system, Atmospheric Environment, vol. 46, no. January 2012. PERGAMON-ELSEVIER SCIENCE LTD, ENGLAND, pp. 376-396, 2012.
A. Hernández-Ortega, Ferreira, P., Merino, P., Medina, M., Guallar, V., and Martínez, A. T., Stereoselective Hydride Transfer by Aryl-Alcohol Oxidase, a Member of the GMC Superfamily., Chembiochem : a European journal of chemical biology. 2012.
A. Arcella, Portella, G., Ruiz, M. L., Eritja, R., Vilaseca, M., Gabelica, V., and Orozco, M., Structure of triplex DNA in the gas phase., Journal of the American Chemical Society, vol. 134, no. 15. pp. 6596-606, 2012.
D. Meister, Kaiser, J., Brinkmann, A., Cortes, T., Kuhn, M., and Kunkel, J., A Study on Data Deduplication in HPC Storage Systems, Supercomputing 2012. 2012.
Í. Goiri, Julià, F., Fitó, O., Macías, M., and Guitart, J., Supporting CPU-based Guarantees in Cloud SLAs via Resource-level QoS Metrics, Future Generation Computer Systems, vol. 28, no. 8. pp. 1295-1302, 2012.
V. Gajinov, Stipić, S., Unsal, O. S., Harris, T., Ayguadé, E., and Cristal, A., Supporting Stateful Tasks in a Dataflow Graph, Proceedings of the 21st international conference on Parallel architectures and compilation techniques. ACM, pp. 435–436, 2012.
R. M. Badia, Labarta, J., Marjanovic, V., F., M. A., Mayo, R., Quintana-Ortí, E. S., and Reyes, R., Symmetric Rank-k Update on Clusters of Multicore Processors with SMPSs, in Applications, Tools and Techniques on the Road to Exascale Computing, IOS Press, 2012.
R. Bertran, Buyuktosunoglu, A., Gupta, M. S., González, M., and Bose, P., Systematic Energy Characterization of CMP/SMT Processor Systems via Automated Micro-Benchmarks, International Symposium on Microarchitecture. 2012.
R. Bertran, Gonzalez Tallada, M., Martorell, X., Navarro, N., and Ayguadé, E., A Systematic Methodology to Generate Decomposable and Responsive Power Models for CMPs, Computers, IEEE Transactions on, vol. PP. IEEE Computer Society, Los Alamitos, CA, USA, p. 1, 2012.
S. Stipić, Tomić, S., Zyulkyarov, F., Cristal, A., Ünsal, O. S., and Valero, M., TagTM - accelerating STMs with hardware tags for fast meta-data access, DATE. pp. 39-44, 2012.
L. - M. Munguía, Bader, D. A., and Ayguadé, E., Task-based Parallel Breadth-First Search in Heterogeneous Environments, Proc. of the annual IEEE International Conference on High Performance Computing (HiPC). IEEE Computer Society, 2012.
C. Scaini, Folch, A., and Navarro, M., Tephra hazard assessment at Concepción Volcano, Nicaragua, Journal of Volcanology and Geothermal Research, vol. 219-220. pp. 41-51, 2012.
J. Fernández-Recio and Verma, C., Theory and simulation: complexity and emergence., Current opinion in structural biology, vol. 22, no. 2. pp. 127-9, 2012.
H. Owen and Codina, R., A third order velocity correction scheme obtained at the discrete level, Int. J. Numer. Meth. Fluids, vol. 69. pp. 52-72, 2012.
P. Radojkovic, Cakarevic, V., Verdú, J., Pajuelo, A., Cazorla, F. J., Nemirovsky, M., and Valero, M., Thread Assignment of Multithreaded Network Applications in Multicore/Multithreaded Processors, IEEE Transactions on Parallel and Distributed Systems, vol. XX. 2012.
C. Pelties, de la Puente, J., Ampuero, J. - P., Brietzke, G. B., and Käser, M., Three-dimensional dynamic rupture simulation with a high-order discontinuous Galerkin method on unstructured tetrahedral meshes, J. Geophys. Res., vol. 117. p. B02309, 2012.
The tomato genome sequence provides insights into fleshy fruit evolution., Nature, vol. 485, no. 7400. pp. 635-41, 2012.
P. Alonso, Badia, R. M., Labarta, J., Barreda, M., Dolz, M. F., Mayo, R., Quintana-Ortí, E. S., and Reyes, R., Tools for Power-Energy Modelling and Analysis of Parallel Scientific Applications, The 41st International Conference on Parallel Processing. IEEE, Pittsburgh, United States, pp. 420–429, 2012.
J. L. Berral, Goiri, Í., Nou, R., Julià, F., Fitó, O., Guitart, J., Gavaldà, R., and Torres, J., Toward Energy-aware Scheduling using Machine Learning, in Energy Efficient Distributed Computing Systems, USA: John Wiley & Sons, 2012, pp. 215-244 .
S. Tomić, Towards a High-Performance Hardware Transactional Memory, 2012.
X. Rubio-Campillo, Valdès, P., Yubero, M., and Ble, E., Tracing a Roman siege from Late Roman Republic wars in Puig Ciutat (North-Eastern Iberian Peninsula), VIIth Fields of Conflict Conference. Budapest, 2012.
R. Gayatri, Badia, R. M., Ayguadé, E., Lujan, M., and Watson, I., Transactional Access to Shared Memory in StarSs, a Task Based Programming Model, 18th International Conference, Euro-Par 2012. Springer Berlin Heidelberg, Rhodes Island, Greece, pp. 514–525, 2012.
A. Negi, Armejach, A., Cristal, A., Unsal, O., and Stenström, P., Transactional prefetching: narrowing the window of contention in hardware transactional memory, Parallel Architectures and Compilation Techniques (PACT). pp. 181-190, 2012.
A. Monteiro, Carvalho, A., Ribeiro, I., Scotto, M., Barbosa, S., Alonso, A., Baldasano, J. M., Pay, M. T., Miranda, A. I., and Borrego, C., Trends in ozone concentrations in the Iberian Peninsula by quantile regression and clustering, Atmospheric Environment, vol. 56, no. September 2012. PERGAMON-ELSEVIER SCIENCE LTD, ENGLAND, pp. 184 - 193, 2012.
H. Owen, Houzeaux, G., Samaniego, C., Cucchietti, F., Marin, G., Tripiana, C., Calmet, H., and Vázquez, M., Two fluids level set: high performance simulation and post processing, High Performance Computing, Networking, Storage and Analysis (SCC), 2012 SC Companion:. IEEE, pp. 1559–1568, 2012.
M. A. Yu, Egawa, T., Shinzawa-Itoh, K., Yoshikawa, S., Guallar, V., Yeh, S. - R., Rousseau, D. L., and Gerfen, G. J., Two tyrosyl radicals stabilize high oxidation States in cytochrome C oxidase for efficient energy conservation and proton translocation., Journal of the American Chemical Society, vol. 134, no. 10. pp. 4753-61, 2012.
O. Canela-Xandri, Julià, A., Gelpí, J. L., and Marsal, S., Unveiling case-control relationships in designing a simple and powerful method for detecting gene-gene interactions., Genetic epidemiology, vol. 36, no. 7. pp. 710-6, 2012.
M. Guevara, Arévalo, G., Gassó, S., Martínez, F., Soret, A., Ferrer, G., and Baldasano, J. M., Updating and Improvement of the High-resolution (1km x 1km, 1h) Emission Model for Spain: HERMES v.2.0, 15th GEIA Conference Emissions to Address Science & Policy Needs, vol. . ACCENT-IGAC-GEIA, 11-13 June, 2012. Toulouse. France, pp. 1-29, 2012.
S. Tomić, Cristal, A., Unsal, O., and Valero, M., Using Dynamic Runtime Testing for Rapid Development of Architectural Simulators, International Journal of Parallel Programming. 2012.
F. Lucas, Masone, D., Saen-oon, S., Wallrapp, F., and Guallar, V., Using QM/MM Methods for the Exploration of Electron Transfer Pathways, Current Inorganic Chemistry, vol. 2, no. 3. pp. 263-272 , 2012.
S. Marras, Variational Multiscale Stabilization of Finite and Spectral Elements for Dry and Moist Atmospheric Problems, Universitat Politècnica de Catalunya, 2012.
S. Marras, Kelly, J. F., Giraldo, F. X., and Vázquez, M., Variational Multiscale Stabilization of High-Order Spectral Elements for the Convection-Diffusion Equation, Journal. Journal of Computational Physics, 2012.
S. Marras, Moragues, M., Vázquez, M., Jorba, O., and Houzeaux, G., A Variational Multiscale Stabilized Finite Element Method for the Solution of the Euler Equations of Nonhydrostatic Stratified Flows, Submitted to J. Comp. Phys. 2012.
T. Hayes, Palomar, O., Unsal, O., Cristal, A., and Valero, M., Vector Extensions for Decision Support DBMS Acceleration, The 45th Annual IEEE/ACM International Symposium on Microarchitecture (MICRO45). pp. 166-176, 2012.

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