Publications

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Author Title Type [ Year(Asc)]
2011
M. Macías and Guitart, J., Client Classification Policies for SLA Negotiation and Allocation in Shared Cloud Datacenters, Lecture Notes on Computer Science (LNCS), 8th International Workshop on Economics of Grids, Clouds, Systems, and Services (GECON'11), vol. Vol. 7150. Paphos, Cyprus, pp. 90-104, 2011.
E. Tejedor, Ejarque, J., Lordan, F., Rafanell, R., Álvarez, J., Lezzi, D., Sirvent, R., and Badia, R. M., A Cloud-unaware Programming Model for Easy Development of Composite Services, Third IEEE International Conference on Coud Computing Technology and Science. IEEE, pp. 375–382, 2011.
E. Tejedor, Farreras, M., Grove, D., Badia, R. M., Almasi, G., and Labarta, J., ClusterSs: a Task-based Programming Model for Clusters, Proceedings of the 20th International ACM Symposium on High Performance Distributed Computing, San Jose, California, USA. pp. 267–268, 2011.
M. Orozco, Orellana, L., Hospital, A., Naganathan, A. N., Emperador, A., Carrillo, O., and Gelpí, J. L., Coarse-grained representation of protein flexibility. Foundations, successes, and shortcomings., Advances in protein chemistry and structural biology, vol. 85. pp. 183-215, 2011.
S. J. Fleishman, Whitehead, T. A., Strauch, E. - M., Corn, J. E., Qin, S., Zhou, H. - X., Mitchell, J. C., Demerdash, O. N. A., Takeda-Shitaka, M., Terashi, G., Moal, I. H., Li, X., Bates, P. A., Zacharias, M., Park, H., Ko, J. -su, Lee, H., Seok, C., Bourquard, T., Bernauer, J., Poupon, A., Azé, J., Soner, S., Ovali, S. K., Ozbek, P., Tal, N. B., Haliloglu, T., Hwang, H., Vreven, T., Pierce, B. G., Weng, Z., Pérez-Cano, L., Pons, C., Fernández-Recio, J., Jiang, F., Yang, F., Gong, X., Cao, L., Xu, X., Liu, B., Wang, P., Li, C., Wang, C., Robert, C. H., Guharoy, M., Liu, S., Huang, Y., Li, L., Guo, D., Chen, Y., Xiao, Y., London, N., Itzhaki, Z., Schueler-Furman, O., Inbar, Y., Potapov, V., Cohen, M., Schreiber, G., Tsuchiya, Y., Kanamori, E., Standley, D. M., Nakamura, H., Kinoshita, K., Driggers, C. M., Hall, R. G., Morgan, J. L., Hsu, V. L., Zhan, J., Yang, Y., Zhou, Y., Kastritis, P. L., Bonvin, A. M. J. J., Zhang, W., Camacho, C. J., Kilambi, K. P., Sircar, A., Gray, J. J., Ohue, M., Uchikoga, N., Matsuzaki, Y., Ishida, T., Akiyama, Y., Khashan, R., Bush, S., Fouches, D., Tropsha, A., Esquivel-Rodríguez, J., Kihara, D., Stranges, B. P., Jacak, R., Kuhlman, B., Huang, S. - Y., Zou, X., Wodak, S. J., Janin, J., and Baker, D., Community-wide assessment of protein-interface modeling suggests improvements to design methodology., Journal of molecular biology, vol. 414, no. 2. pp. 289-302, 2011.
A. - C. Lesage, de la Puente, J., Cela, J. M., Araya-Polo, M., and González, G., Comparison of irregular cartesian finite difference methods for acoustic RTM, SEG Technical Program Expanded Abstracts, vol. 30. SEG, pp. 2845-2849, 2011.
P. Jiménez-Guerrero, Jorba, O., Pay, M. T., Montávez, J. P., Jerez, S., Gómez-Navarro, J. J., and Baldasano, J. M., Comparison of two different sea-salt aerosol schemes as implemented in air quality models applied to the Mediterranean Basin, Atmospheric Chemistry and Physics, vol. 11, no. 10. COPERNICUS GESELLSCHAFT MBH , GERMANY, pp. 4833–4850, 2011.
S. Royuela, Ferrer, R., Duran, A., and Martorell, X., Compiler Analysis for Improving OpenMP Code Generation, ACACES 2011. Poster Abstracts. Advanced Computer Architecture and Compilation for Embedded Systems. 2011.
A. Soret, Jiménez-Guerrero, P., and Baldasano, J. M., Comprehensive air quality planning for the Barcelona Metropolitan Area through traffic management, Atmospheric Pollution Research, vol. 2, no. 3. Turkish National Committee for Air Pollution Research and Control (TUNCAP), TURKEY, pp. 255-266, 2011.
E. Akpinar, Tomić, S., Cristal, A., Unsal, O., and Valero, M., A Comprehensive Study of Conflict Resolution Policies in Hardware Transactional Memory, 6th ACM SIGPLAN Workshop on Transactional Computing (TRANSACT). San Jose Convention Center, United States, 2011.
D. Lezzi, Rafanell, R., Lordan, F., Tejedor, E., and Badia, R. M., COMPSs in the VENUS-C Platform: enabling e-Science applications on the Cloud, 5th Iberian Grid Infrastructure Conference (IBERGRID 2011). Netbiblo, Santander, Spain, pp. 73–84, 2011.
D. J. Doorly, Taylor, D., Houzeaux, G., Rennier, C., Tolley, N., and Vázquez, M., Computational Modelling of Airflow in the Respiratory Tract, PARCFD2011. Barcelona (Spain), 2011.
L. Kowalcyk, Ratera, M., Paladino, A., Bartoccioni, P., Errasti, E., Valencia, E., Portella, G., Zorzano, A., Fita, I., Orozco, M., Carpena, X., Vázquez-Ibar, J. L., and PalacÍn, M., Crystal structure of a substrate-bound amino acid antiporter in the outward open conformation: mechanism of substrate recognintion and transport. In Press., 2011.
J. L. Gelpí, Data Management in Massive Genomic Projects, IV International Symposium on BIOMEDICAL INFORMATICS IN EUROPE. 2011.
O. Jorba, Pandolfi, M., Spada, M., Baldasano, J. M., Pey, J., Alastuey, A., Arnold, D., Sicard, M., Artiñano, B., Revuelta, M. A., and Querol, X., The DAURE field campaign: meteorological overview, Atmospheric Chemistry and Physics Discussion, vol. 11, no. 2. COPERNICUS PUBLICATIONS, GERMANY, pp. 4953-5001, 2011.
R. Lohner, Mut, F., Cebral, J., Aubry, R., and Houzeaux, G., Deflated Preconditioned Conjugate Gradient Solvers for the Pressure-Poisson Equation: Extensions and Improvements, Int. J. Numer. Meth. Engn., vol. 87. pp. 2-14, 2011.
R. M. Badia, Hudzia, B., Corrales, M., Dimitrakos, T., K. Djemame,, Elmroth, E., Ferrer, A. J., Forgó, N., Guitart, J., Hernández, F., Kipp, A., Konstanteli, K., Kousiouris, G., Nair, S. K., Sharif, T., Sheridan, C., Sirvent, R., Tordsson, J., Varvarigou, T., Wesner, S., Ziegler, W., and Zsigri, C., Demonstration of the OPTIMIS Toolkit for Cloud Service Provisioning, Lecture Notes on Computer Science (LNCS), Towards a Service-Based Internet, 4th European Conference, ServiceWave 2011 (SW'11), vol. Vol. 6994, no. Lecture Notes on Computer Science (LNCS). Poznan, Poland, pp. 331-333, 2011.
L. Álvarez, Bertran, R., González, M., Martorell, X., Navarro, N., and Ayguadé, E., Design space exploration for aggressive core replication schemes in CMPs, Proceedings of the 20th international symposium on High performance distributed computing. ACM, New York, NY, USA, pp. 269–270, 2011.
T. Cortes, Deterministic storage in heterogeneous environments. SCALUS Winter School, 2011.
B. Hu, Maio, D. F., Rem, P. C., Houzeaux, G., Calmet, H., and Owen, H., Development of inverse magnetic density separation of polyolefin mixtures, Proceedings of the 26th International Conference on Solid Waste Technology and Management. Philadelphia (USA), pp. 968-976, 2011.
C. Villavieja, Karakostas, V., Vilanova, L., Etsion, Y., Ramirez, A., Mendelson, A., Navarro, N., Cristal, A., and Unsal, O., DiDi: Mitigating The Performance Impact of TLB Shootdowns Using A Shared TLB Directory, Parallel Architectures and Compilation Techniques (PACT). Galveston Island, United States, 2011.
G. Huhs, Die Väter der Quantenmechanik, in Quanten, Felder, Schwarze Löcher, Verlag der Technischen Universität Graz, 2011, pp. 225–236.
J. M. Baldasano, Dust modelling, 2nd. Training Course on WMO SDS-WAS (satellite and ground observation and modelling of atmospheric dust) . World Meteorological Organization (WMO), 21-25 November 2011. Antalya, Turkey, 2011.
J. M. Baldasano, Dust Transport Forecast Models and Early Warning System, International Training Course on “Meteorological Services, Sand and Dust Storm (SDS) Forecast and Early Warning System” and “Erosion Preventing Techniques and Controlling Methods and Forestry”. Turkish State Meteorological Service (TSMS), 22-26 February 2011. Istanbul, Turkey, 2011.
C. Pelties, de la Puente, J., Ampuero, J. - P., Brietzke, G. B., and Käser, M., Dynamic Rupture Simulation with a High-order Discontinuous Galerkin Method on Unstructured Tetrahedral Meshes, 2011 SCEC Annual Meeting. p. B-053, 2011.
M. D'Abramo, Orozco, M., and Amadei, A., Effects of local electric fields on the redox free energy of single stranded DNA., Chemical communications (Cambridge, England), vol. 47, no. 9. pp. 2646-8, 2011.
A. Fries, Castañeda, J., Isasi, Y., Taboada, G. L., Portell, J., and Sirvent, R., An efficient framework for Java data processing systems in HPC environments, Proceedings of SPIE, vol. 8183. 2011.
T. Ramírez, Santana, O. J., Pajuelo, A., and Valero, M., Efficient runahead threads. PACT 2010. International Conference on Parallel Architectures and Compiler Techniques, 2011.
J. M. Baldasano, El actual Cambio Climático. Evidencias entre los AR4 y AR5 informes del IPCC, Congreso RECUWATT: Reciclaje y Energía. Consorci pel Tractament de Residus Sòlids Urbans del Maresme i Agència de Residus de Catalunya, 24-25 March 2011. Mataró, Spain, 2011.
J. M. Baldasano, El Comportamiento Ético en el Actual Cambio Climático Antropogénico, VII Congreso Mundial de Bioética. Sociedad Internacional de Bioética (SIBI), 20 September 2011. Gijón, Spain, 2011.
J. M. Baldasano, El gas natural como una opción de transición para mejorar la calidad del aire en entornos urbanos. Aplicación a las ciudades de Madrid y Barcelona, SEDIGAS. SEDIGAS-Asociación Española de Gas, 25 May 2011. Madrid, Spain, 2011.
F. M. Lucas, Rousseau, D. L., and Guallar, V., Electron transfer pathways in cytochrome c oxidase., Biochimica et biophysica acta, vol. 1807, no. 10. pp. 1305-13, 2011.
D. Lezzi, Rafanell, R., Carrion, A., Blanquer, I., Badia, R. M., and Hernández, V., Enabling e-Science applications on the Cloud with COMPSs, International Euro-Par Conference 2011. Springer-Verlag Berlin Heidelberg, Bordeaux, France, 2011.
R. Bertran, Becerra, Y., Carrera, D., Beltran, V., González, M., Martorell, X., Navarro, N., Torres, J., and Ayguadé, E., Energy accounting for shared virtualized environments under DVFS using PMC-based power models, Future Generation Computer Systems, vol. 28, no. 2. pp. 457 - 468, 2011.
J. Subhlok, Gabriel, E., Nandagudi, G., and Giménez, J., Estimation of MPI Application Performance on Volunteer Environments, HeteroPar'11. 2011.
A. Badia and Jorba, O., Evaluation of the NMMB/BSC-CHEM gas-phase results at global scale for summer 2004, 8th European Geosciences Union Conference (EGU) General Assembly. Geophysical Research Abstracts, vol. 13. European Geosciences Union (EGU), 3-8 April, 2011. Viena, Austria, 2011.
V. Quesada, Conde, L., Villamor, N., Ordóñez, G. R., Jares, P., Bassaganyas, L., Ramsay, A. J., Beà, S., Pinyol, M., Martínez-Trillos, A., López-Guerra, M., Colomer, D., Navarro, A., Baumann, T., Aymerich, M., Rozman, M., Delgado, J., Giné, E., Hernández, J. M., González-Díaz, M., Puente, D. A., Velasco, G., Freije, J. M. P., Tubío, J. M. C., Royo, R., Gelpí, J. L., Orozco, M., Pisano, D. G., Zamora, J., Vázquez, M., Valencia, A., Himmelbauer, H., Bayés, M., Heath, S., Gut, M., Gut, I., Estivill, X., López-Guillermo, A., Puente, X. S., Campo, E., and López-Otín, C., Exome sequencing identifies recurrent mutations of the splicing factor SF3B1 gene in chronic lymphocytic leukemia., Nature genetics, vol. 44, no. 1. pp. 47-52, 2011.
E. Tejedor, Lordan, F., and Badia, R. M., Exploiting Inherent Task-Based Parallelism in Object-Oriented Programming, Proceedings of the 12th IEEE/ACM International Conference on Grid Computing, Lyon, France. pp. 74–81, 2011.
E. Quiñones, Abella, J., Cazorla, F., and Valero, M., Exploiting Intra-Task Slack Time of Load Operations for DVFS in Hard Real-Time Multi-core Systems, In Work in Progess (WiP), under the the 24nd Euromicro Conference on Real-Time Systems (ECRTS 2011). 2011.
G. Houzeaux, Aubry, R., and Vázquez, M., Extension of fractional step techniques for incompressible flows: The preconditioned Orthomin(1) for the pressure Schur complement, Computers & Fluids, vol. 44. pp. 297-313, 2011.
R. Aubry, Houzeaux, G., and Vázquez, M., Extensions of a surface remeshnig approach, 49th AIAA Aerospace Sciences Meeting. Orlando (USA), 2011.
M. Casas, Servat, H., Badia, R. M., and Labarta, J., Extracting the optimal sampling frequency of applications using spectral analysis, Concurrency and Computation: Practice and Experience. John Wiley & Sons, Ltd, p. n/a–n/a, 2011.
G. Yalcin, Unsal, O., Cristal, A., and Valero, M., FaulTM-multi: Fault Tolerance for Multithreaded Applications Running on Transactional Memory Hardware, Workshop on Wild and Sane Ideas in Speculation and Transactions. Galveston Island, TX, United States, 2011.
C. Villavieja, Etsion, Y., Ramirez, A., and Navarro, N., FELI: HW/SW support for On-Chip Distributed Shared Memory in Multicores, Euro-Par. 2011.
G. Yalcin, Unsal, O., Cristal, A., and Valero, M., FIMSIM: A fault injection infrastructure for microarchitectural simulators, 29th International Conference on Computer Design (ICCD). Amherst, MA, United States, pp. 431–432, 2011.
M. Avila, Principe, J., and Codina, R., A finite element dynamical nonlinear subscale approximation for the low Mach number flow equations, Journal of Computational Physics, vol. 230, no. 22. pp. 7988–8009, 2011.
J. Baiges, Codina, R., and Owen, H., The Fixed-Mesh ALE approach for the numerical simulation of floating solids, International Journal for Numerical Methods in Fluids, vol. 67. John Wiley & Sons, Ltd., pp. 1004–1023, 2011.
O. Arcas, Sönmez, N., Unsal, O., Cristal, A., and Valero, M., A Flexible Hybrid Transactional Memory Multicore on FPGA, Jornadas de Paralelismo 2011. Servicio de Publicaciones. Universidad de La Laguna, Tenerife, 2011, La Laguna, Tenerife, Spain, pp. 283–289, 2011.
H. Servat, Llort, G., Giménez, J., Huck, K., and Labarta, J., Folding: detailed analysis with coarse sampling, Tools for High Performance Computing 2011. Proceedings of the 5th International Workshop on Parallel Tools for High Performance Computing. 2011.
H. Owen and Codina, R., A free surface finite element model for low Froude number mould filling problems on fixed meshes, International Journal for Numerical Methods in Fluids, vol. 66. John Wiley & Sons, Ltd., pp. 833–851, 2011.

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