Publications

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S. Grosdidier, Carbó, L. R., Buzón, V., Brooke, G., Nguyen, P., Baxter, J. D., Bevan, C., Webb, P., Estébanez-Perpiñá, E., and Fernández-Recio, J., Allosteric conversation in the androgen receptor ligand-binding domain surfaces., Molecular endocrinology (Baltimore, Md.), vol. 26, no. 7. pp. 1078-90, 2012.
E. Gracia, Farré, D., Cortés, A., Ferrer-Costa, C., Orozco, M., Mallol, J., Lluís, C., Canela, E. I., McCormick, P. J., Franco, R., Fanelli, F., and Casadó, V., The catalytic site structural gate of adenosine deaminase allosterically modulates ligand binding to adenosine receptors., FASEB journal : official publication of the Federation of American Societies for Experimental Biology, vol. 27, no. 3. pp. 1048-61, 2013.
B. Islam, Sgobba, M., Laughton, C., Orozco, M., Sponer, J., Neidle, S., and Haider, S., Conformational dynamics of the human propeller telomeric DNA quadruplex on a microsecond time scale., Nucleic acids research, vol. 41, no. 4. pp. 2723-35, 2013.
L. Pérez-Cano, Eliahoo, E., Lasker, K., Wolfson, H. J., Glaser, F., Manor, H., Bernadó, P., and Fernández-Recio, J., Conformational transitions in human translin enable nucleic acid binding., Nucleic acids research, vol. 41, no. 21. pp. 9956-66, 2013.
M. Orozco, The dynamic view of proteins: comment on "Comparing proteins to their internal dynamics: exploring structure-function relationships beyond static structural alignments"., Physics of life reviews, vol. 10, no. 1. pp. 29-30; discussion 39-40, 2013.
O. Taboureau, Baell, J. B., Fernández-Recio, J., and Villoutreix, B. O., Established and emerging trends in computational drug discovery in the structural genomics era., Chemistry & biology, vol. 19, no. 1. pp. 29-41, 2012.
S. Djebali, Lagarde, J., Kapranov, P., Lacroix, V., Borel, C., Mudge, J. M., Howald, C., Foissac, S., Ucla, C., Chrast, J., Ribeca, P., Martin, D., Murray, R. R., Yang, X., Ghamsari, L., Lin, C., Bell, I., Dumais, E., Drenkow, J., Tress, M. L., Gelpí, J. L., Orozco, M., Valencia, A., van Berkum, N. L., Lajoie, B. R., Vidal, M., Stamatoyannopoulos, J., Batut, P., Dobin, A., Harrow, J., Hubbard, T., Dekker, J., Frankish, A., Salehi-Ashtiani, K., Reymond, A., Antonarakis, S. E., Guigó, R., and Gingeras, T. R., Evidence for transcript networks composed of chimeric RNAs in human cells., PloS one, vol. 7, no. 1. p. e28213, 2012.
M. Terrazas, Alagia, A., Faustino, I., Orozco, M., and Eritja, R., Functionalization of the 3'-ends of DNA and RNA strands with N-ethyl-N-coupled nucleosides: a promising approach to avoid 3'-exonuclease-catalyzed hydrolysis of therapeutic oligonucleotides., Chembiochem : a European journal of chemical biology, vol. 14, no. 4. pp. 510-20, 2013.
Y. A. Small, Guallar, V., Soudackov, A. V., and Hammes-Schiffer, S., Hydrogen bonding pathways in human dihydroorotate dehydrogenase., The journal of physical chemistry. B, vol. 110, no. 39. pp. 19704-10, 2006.
F. Raimondi, Felline, A., Portella, G., Orozco, M., and Fanelli, F., Light on the structural communication in Ras GTPases., Journal of biomolecular structure & dynamics, vol. 31, no. 2. pp. 142-57, 2013.
A. Hospital, Andrio, P., Fenollosa, C., Cicin-Sain, D., Orozco, M., and Gelpí, J. L., MDWeb and MDMoby: an integrated web-based platform for molecular dynamics simulations., Bioinformatics (Oxford, England), vol. 28, no. 9. pp. 1278-9, 2012.
A. Hospital, Faustino, I., Collepardo-Guevara, R., González, C., Gelpí, J. L., and Orozco, M., NAFlex: a web server for the study of nucleic acid flexibility., Nucleic acids research, vol. 41, no. Web Server issue. pp. W47-55, 2013.
A. Hospital, Faustino, I., Collepardo-Guevara, R., González, C., Gelpí, J. L., and Orozco, M., NAFlex: a web server for the study of nucleic acid flexibility., Nucleic Acids Res, vol. 41, no. Web Server issue. pp. W47-55, 2013.
C. Pons, Glaser, F., and Fernández-Recio, J., Prediction of protein-binding areas by small-world residue networks and application to docking., BMC bioinformatics, vol. 12. p. 378, 2011.
S. Rao, Bálint, S., Cossins, B. P., Guallar, V., and Petrov, D., Raman study of mechanically induced oxygenation state transition of red blood cells using optical tweezers., Biophysical journal, vol. 96, no. 1. pp. 209-16, 2009.
Y. Chen, Tascón, I., Neunuebel, R. M., Pallara, C., Brady, J., Kinch, L. N., Fernández-Recio, J., Rojas, A. L., Machner, M. P., and Hierro, A., Structural basis for Rab1 de-AMPylation by the Legionella pneumophila effector SidD., PLoS pathogens, vol. 9, no. 5. p. e1003382, 2013.
T. Castaño, Wang, H., Campillo, N. E., Ballester, S., González-García, C., Hernández, J., Pérez, C., Cuenca, J., Pérez-Castillo, A., Martínez, A., Huertas, O., Gelpí, J. L., Luque, F. J., Ke, H., and Gil, C., Synthesis, structural analysis, and biological evaluation of thioxoquinazoline derivatives as phosphodiesterase 7 inhibitors., ChemMedChem, vol. 4, no. 5. pp. 866-76, 2009.
J. Fernández-Recio and Verma, C., Theory and simulation: complexity and emergence., Current opinion in structural biology, vol. 22, no. 2. pp. 127-9, 2012.
D. I. Perez, Conde, S., Pérez, C., Gil, C., Simon, D., Wandosell, F., Moreno, F. J., Gelpí, J. L., Luque, F. J., and Martínez, A., Thienylhalomethylketones: Irreversible glycogen synthase kinase 3 inhibitors as useful pharmacological tools., Bioorganic & medicinal chemistry, vol. 17, no. 19. pp. 6914-25, 2009.
J. M. Fernández-Real, Mercader, J. M., Ortega, F. J., Moreno-Navarrete, J. M., López-Romero, P., and Ricart, W., Transferrin receptor-1 gene polymorphisms are associated with type 2 diabetes., European journal of clinical investigation, vol. 40, no. 7. pp. 600-7, 2010.
E. Durán, Djebali, S., González, S., Flores, O., Mercader, J. M., Guigó, R., Torrents, D., Soler-López, M., and Orozco, M., Unravelling the hidden DNA structural/physical code provides novel insights on promoter location., Nucleic acids research, vol. 41, no. 15. pp. 7220-30, 2013.
X. S. Puente, Pinyol, M., Quesada, V., Conde, L., Ordóñez, G. R., Villamor, N., Escaramis, G., Jares, P., Beà, S., González-Díaz, M., Bassaganyas, L., Baumann, T., Juan, M., López-Guerra, M., Colomer, D., Tubío, J. M. C., López, C., Navarro, A., Tornador, C., Aymerich, M., Rozman, M., Hernández, J. M., Puente, D. A., Freije, J. M. P., Velasco, G., Gutiérrez-Fernández, A., Costa, D., Carrió, A., Guijarro, S., Enjuanes, A., Hernández, L., Yagüe, J., Nicolás, P., Romeo-Casabona, C. M., Himmelbauer, H., Castillo, E., Dohm, J. C., de Sanjosé, S., Piris, M. A., de Alava, E., San Miguel, J., Royo, R., Gelpí, J. L., Torrents, D., Orozco, M., Pisano, D. G., Valencia, A., Guigó, R., Bayés, M., Heath, S., Gut, M., Klatt, P., Marshall, J., Raine, K., Stebbings, L. A., Futreal, A. P., Stratton, M. R., Campbell, P. J., Gut, I., López-Guillermo, A., Estivill, X., Montserrat, E., López-Otín, C., and Campo, E., Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia., Nature, vol. 475, no. 7354. pp. 101-5, 2011.
E. Ballana, Senserrich, J., Pauls, E., Faner, R., Mercader, J. M., Uyttebroeck, F., Palou, E., Mena, M. P., Grau, E., Clotet, B., Ruiz, L., Telenti, A., Ciuffi, A., and Esté, J. A., ZNRD1 (zinc ribbon domain-containing 1) is a host cellular factor that influences HIV-1 replication and disease progression., Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, vol. 50, no. 7. pp. 1022-32, 2010.