Publications

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2011
Fleishman, S. J. et al. Community-wide assessment of protein-interface modeling suggests improvements to design methodology. Journal of molecular biology 414, 289-302 (2011).
Lucas, F. M., Rousseau, D. L. & Guallar, V. Electron transfer pathways in cytochrome c oxidase. Biochimica et biophysica acta 1807, 1305-13 (2011).
Helft, L. et al. LRR conservation mapping to predict functional sites within protein leucine-rich repeat domains. PloS one 6, e21614 (2011).
Hernández-Ortega, A. et al. Modulating O2 reactivity in a fungal flavoenzyme: involvement of aryl-alcohol oxidase Phe-501 contiguous to catalytic histidine. The Journal of biological chemistry 286, 41105-14 (2011).
Kowalczyk, L. et al. Molecular basis of substrate-induced permeation by an amino acid antiporter. Proceedings of the National Academy of Sciences of the United States of America 108, 3935-40 (2011).
Naganathan, A. N. & Orozco, M. The native ensemble and folding of a protein molten-globule: functional consequence of downhill folding. Journal of the American Chemical Society 133, 12154-61 (2011).
Pons, C., Glaser, F. & Fernández-Recio, J. Prediction of protein-binding areas by small-world residue networks and application to docking. BMC bioinformatics 12, 378 (2011).
Naganathan, A. N. & Orozco, M. The protein folding transition-state ensemble from a Gō-like model. Physical chemistry chemical physics : PCCP 13, 15166-74 (2011).
Pons, C., Talavera, D., de la Cruz, X., Orozco, M. & Fernández-Recio, J. Scoring by intermolecular pairwise propensities of exposed residues (SIPPER): a new efficient potential for protein-protein docking. Journal of chemical information and modeling 51, 370-7 (2011).
Ayuso-Tejedor, S., García-Fandiño, R., Orozco, M., Sancho, J. & Bernadó, P. Structural analysis of an equilibrium folding intermediate in the apoflavodoxin native ensemble by small-angle X-ray scattering. Journal of molecular biology 406, 604-19 (2011).