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2013

Emperador, A., Solernou, A., Sfriso, P., Pons, C., Gelpí, J.L., Fernández-Recio, J. & Orozco, M. Efficient relaxation of protein-protein interfaces by discrete molecular dynamics simulations. Journal of Chemical Theory and Computation 9, 1222–1229 (2013).

2012

Pons, C., Jiménez-González, D., ilia Gonzalez-Ãlvarez, C., Servat, H., Cabrera-Benitez, D., Aguilar, X. & Fernández-Recio, J. Cell-Dock: high-performance protein-protein docking. Bioinformatics (2012).doi:10.1093/bioinformatics/bts454

Pons, C., Jiménez-González, D., González-Álvarez, C., Servat, H., Cabrera-Benítez, D., Aguilar, X. & Fernández-Recio, J. Cell-Dock: high-performance protein-protein docking. Bioinformatics (Oxford, England) 28, 2394-6 (2012).

Masone, D., Cabeza de Vaca, I., Pons, C., Fernandez-Recio, J. & Guallar, V. H-bond network optimization in protein-protein complexes: are all-atom force field scores enough?. Proteins 80, 818-24 (2012).

2011

Fleishman, S.J., Whitehead, T.A., Strauch, E.-M., Corn, J.E., Qin, S., Zhou, H.-X., Mitchell, J.C., Demerdash, O.N.A., Takeda-Shitaka, M., Terashi, G., Moal, I.H., Li, X., Bates, P.A., Zacharias, M., Park, H., Ko, J.-su, Lee, H., Seok, C., Bourquard, T., Bernauer, J., Poupon, A., Azé, J., Soner, S., Ovali, S.K., Ozbek, P., Tal, N.B., Haliloglu, T., Hwang, H., Vreven, T., Pierce, B.G., Weng, Z., Pérez-Cano, L., Pons, C., Fernández-Recio, J., Jiang, F., Yang, F., Gong, X., Cao, L., Xu, X., Liu, B., Wang, P., Li, C., Wang, C., Robert, C.H., Guharoy, M., Liu, S., Huang, Y., Li, L., Guo, D., Chen, Y., Xiao, Y., London, N., Itzhaki, Z., Schueler-Furman, O., Inbar, Y., Potapov, V., Cohen, M., Schreiber, G., Tsuchiya, Y., Kanamori, E., Standley, D.M., Nakamura, H., Kinoshita, K., Driggers, C.M., Hall, R.G., Morgan, J.L., Hsu, V.L., Zhan, J., Yang, Y., Zhou, Y., Kastritis, P.L., Bonvin, A.M.J.J., Zhang, W., Camacho, C.J., Kilambi, K.P., Sircar, A., Gray, J.J., Ohue, M., Uchikoga, N., Matsuzaki, Y., Ishida, T., Akiyama, Y., Khashan, R., Bush, S., Fouches, D., Tropsha, A., Esquivel-Rodríguez, J., Kihara, D., Stranges, B.P., Jacak, R., Kuhlman, B., Huang, S.-Y., Zou, X., Wodak, S.J., Janin, J. & Baker, D. Community-wide assessment of protein-interface modeling suggests improvements to design methodology. Journal of molecular biology 414, 289-302 (2011).

Masone, D., Cabeza de Vaca, I., Pons, C., Recio, J.F. & Guallar, V. H-bond network optimization in protein-protein complexes: Are all-atom force field scores enough?. Proteins (2011).doi:10.1002/prot.23239

Pons, C., Glaser, F. & Fernandez-Recio, J. Prediction of protein-binding areas by small-world residue networks and application to docking. BMC bioinformatics 12, 378 (2011).

Pons, C., Talavera, D., de la Cruz, X., Orozco, M. & Fernández-Recio, J. Scoring by intermolecular pairwise propensities of exposed residues (SIPPER): a new efficient potential for protein-protein docking. Journal of chemical information and modeling 51, 370-7 (2011).