Publications

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Author Title Type [ Year(Asc)]
2014
Ferrer, M., de la Puente, J. & Castillo, J. E. 3D Viscoelastic Anisotropic Seismic Modelling with High-Order Mimetic Finite Differences. International Conference on Spectral and High Order Methods (ICOSAHOM). June 23nd-27th, Salt Lake City, USA (2014). at <http://www.icosahom2014.org/images/submissions/abstracts/icosahom2014_submission_227.pdf>
Casas, M. & Bronevetsky, G. Active Measurement of Memory Resource Consumption. 28th IEEE International Parallel & Distributed Processing Symposium (IPDPS) (2014).
Casas, M. & Bronevetsky, G. Active Measurement of the Impact of Network Switch Utilization on Application Performance. 28th IEEE International Parallel & Distributed Processing Symposium (IPDPS) (2014).
de la Puente, J. Advanced Algorithms for the Modelling and Inversion of 3D Seismic and Electromagnetic Waves: An HPC Approach. M2OPIII 2014 – Third International Workshop on Multiphysics, Multiscale and Optimization Problems. May 22nd-23rd. Bilbao, Spain (2014).
Balbo, A. L. et al. Agent-Based Simulation of Holocene Monsoon Precipitation Patterns and Hunter-Gatherer Population Dynamics in Semi-arid Environments. Journal of Archaeological Method and Theory (2014). doi:10.1007/s10816-014-9203-1
Pay, M. T., Martínez, F., Guevara, M. & Baldasano, J. M. Air quality forecasts at kilometer scale grid over Spanish complex terrains. Geoscientific Model Development Discussions 7, 2293–2334 (2014).
Koldan, J., Puzyrev, V., de la Puente, J., Houzeaux, G. & Cela, J. M. Algebraic multigrid preconditioning within parallel finite-element solvers for 3-D electromagnetic modelling problems in geophysics. Geophysical Journal International 197, 1442-1458 (2014).
Casoni, E. et al. Alya: computational solid mechanics for supercomputers. (2014).
Lucas, M.  F., Cabeza de Vaca, I., Takahashi, R., Rubio-Martínez, J. & Guallar, V. íctor. Atomic Level Rendering of DNA-Drug Encounter. Biophysical Journal 106, 421 - 429 (2014).
Lucas, M. F., Cabeza de Vaca, I., Takahashi, R., Rubio-Martínez, J. & Guallar, V. Atomic Level Rendering of DNA-Drug Encounter. Biophysical journal 106, 421-9 (2014).
Hosseini, A. et al. Atomic Picture of Ligand Migration in Toluene 4-Monooxygenase. The Journal of Physical Chemistry B null (2014). doi:10.1021/jp502509a
Lensink, M. F. et al. Blind prediction of interfacial water positions in CAPRI. Proteins 82, 620-32 (2014).
Hanzich, M., Rodriguez, J. E., Gutierrez, N. & Cela, J. M. BSIT: A FLEXIBLE PLATFORM FOR DEVELOPMENT OF EFFICIENT SIMULATION SOFTWARE. IACM - ECCOMAS (2014).
Fitó, O. & Guitart, J. Business-driven Management of Infrastructure-level Risks in Cloud Providers. Future Generation Computer Systems Vol. 32, 41-53 (2014).
Miranda, A. & Cortes, T. CRAID: Online RAID Upgrades using Dynamic Hot Data Reorganization. 12th USENIX Conference on File and Storage Technologies (2014).
Puzyrev, V. et al. CSEM monitoring of a CO2 reservoir imaged by MT. 76th EAGE Conference & Exhibition - Workshops (2014). doi:10.3997/2214-4609.20140570
Hanzich, M., Kormann, J., Rodriguez, J. E., de la Puente, J. & Cela, J. M. Developing Full Waveform Inversion Using HPC Frameworks: BSIT. EAGE Workshop on High Performance Computing for Upstream, 7th-10th September, Crete, Greece HPC29 (2014). at <http://eage.org/event/index.php?eventid=1129&evp=13077&ActiveMenu=&Opendivs=&act=det&prev=&ses=2777>
Jones, E. M. et al. Differential Control of Heme Reactivity in Alpha and Beta Subunits of Hemoglobin: A Combined Raman Spectroscopic and Computational Study. Journal of the American Chemical Society null (2014). doi:10.1021/ja503328a
Faustino, I., Curutchet, C., Luque, J. F. & Orozco, M. The DNA-forming properties of 6-selenoguanine. Physical chemistry chemical physics : PCCP 16, 1101-10 (2014).
Pandolfi, M. et al. Effects of sources and meteorology on particulate matter in the Western Mediterranean Basin: An overview of the DAURE campaign. Journal of Geophysical Research: Atmospheres 119, 4978–5010 (2014).
Lezzi, D., Lordan, F., Rafanell, R. & Badia, R. M. Execution of scientific workflows on federated multi-cloud infrastructures. Euro-Par 2013: Parallel Processing Workshops 8374, 136-145 (2014).
Brömmel, D. et al. Experience with the MPI/STARSS programming model on a large production code. Advances in Parallel Computing 25, 357-366 (2014).
Rubio, F., Hanzich, M., Farrès, A., de la Puente, J. & Cela, J. M. Finite-Difference Staggered Grids in GPUs for Anisotropic Elastic Wave Propagation Simulation. Computers and Geosciences 70, 181-189 (2014).
González-Férez, P., Piernas, J. & Cortes, T. A General Framework for Dynamic and Automatic I/O Scheduling in Hard and Solid-State Drives. Journal of Parallel and Distributed Computing 2014, 2380–2391 (2014).
de la Puente, J., Hanzich, M., Gutierrez, N., Rodriguez, J. E. & Kormann, J. HPC Solutions for Geophysical Exploration Problems: Efficiency, Reliability and Maintenance for Real-Life Applications. Platform of Advanced Scientific Computing (PASC 2014) 1st Conference, Zürich, Switzerland (2014).
Servat, H., Llort, G., González, J., Giménez, J. & Labarta, J. Identifying code phases using piece-wise linear regressions. 28th IEEE International Parallel & Distributed Processing Symposium (IPDPS) 941-951 (2014).
Baldasano, J. M., Soret, A., Guevara, M., Martínez, F. & Gassó, S. Integrated assessment of air pollution using observations and modelling in Santa Cruz de Tenerife (Canary Islands). Science of The Total Environment 473–474, 576 - 588 (2014).
Madella, M. et al. Introduction to Simulating the Past. Journal of Archaeological Method and Theory 21, 251-257 (2014).
Angourakis, A. et al. Land Use Patterns in Central Asia. Step 1: The Musical Chairs Model. Journal of Archaeological Method and Theory (2014). doi:10.1007/s10816-013-9197-0
Avila, M., Codina, R. & Principe, J. Large Eddy Simulation of low Mach number flows using dynamic and orthogonal subgrid scales. Computer & Fluids (2014).
Akita, Y. et al. Large Scale Air Pollution Estimation Method Combining Land Use Regression and Chemical Transport Modeling in a Geostatistical Framework. Environmental Science & Technology 48, 4452–4459 (2014).
Artigas, F., Marti, A., Schäfer, K., Christine, H. & Pechmann, I. Long term carbon storage potential and CO2 sink strength of a restored salt marsh in New Jersey. Agricultural and Forest Meteorology (2014).
Rubio, F., Hanzich, M., de la Puente, J. & Gutierrez, N. Lossy Data Compression with DCT Transforms. EAGE Workshop on High Performance Computing for Upstream, 7th-10th September, Crete, Greece HPC30 (2014). at <http://www.eage.org/events/index.php?eventid=&evp=13077&ActiveMenu=13&Opendivs=&act=det&prev=&ses=2778#>
Portella, G., Germann, M. W., Hud, N. V. & Orozco, M. MD and NMR Analyses of Choline and TMA Binding to Duplex DNA: On the Origins of Aberrant Sequence-Dependent Stability by Alkyl Cations in Aqueous and Water-Free Solvents. Journal of the American Chemical Society (2014). doi:10.1021/ja410698u
Portella, G., Germann, M. W., Hud, N. V. & Orozco, M. MD and NMR Analyses of Choline and TMA Binding to Duplex DNA: On the Origins of Aberrant Sequence-Dependent Stability by Alkyl Cations in Aqueous and Water-Free Solvents. Journal of the American Chemical Society (2014). doi:10.1021/ja410698u
de la Puente, J., Ferrer, M., Hanzich, M., Castillo, J. E. & Cela, J. M. Mimetic seismic wave modeling including topography on deformed staggered grids. Geophysics 79, T125-T141 (2014).
Folch, A., Mingari, L., Osores, M. S. & Collini, E. Modeling volcanic ash resuspension. Application to the 15-16 October 2011 outbreak episode in Central Patagonia, Argentina. Nat. Hazards Earth Syst. Sci 14, 119–133 (2014).
Gelpi, J. L. Molecular Dynamics Simulations. Going high-throughput. Firsh BCAM Workshop on Non Linear dynamics on biological systems. (2014).
Takahashi, R., Gil, V. íctorA. & Guallar, V. Monte Carlo Free Ligand Diffusion with Markov State Model Analysis and Absolute Binding Free Energy Calculations. Journal of Chemical Theory and Computation 10, 282-288 (2014).
Filgueras, A. et al. OmpSs@Zynq All-Programmable SoC Ecosystem. 22nd ACM/SIGDA International Symposium on Field-Programmable Gate Arrays (2014). at <http://www.eecg.utoronto.ca/FPGA2014/>
Baklanov, A. et al. Online coupled regional meteorology chemistry models in Europe: current status and prospects. Atmospheric Chemistry and Physics 14, 317–398 (2014).
Meléndez, A., Sallarès, V., Ranero, C. R. & Kormann, J. Origin of water layer multiple phases with anomalously high amplitude in near-seafloor wide-angle seismic recordings. Geophysical Journal International 196, 243–252 (2014).
Barrera-Escoda, A., Gonçalves, M., Guerreiro, D., Cunillera, J. & Baldasano, J. M. Projections of temperature and precipitation extremes in the North Western Mediterranean Basin by dynamical downscaling of climate scenarios at high resolution (1971–2050). Climatic Change 122, 567-582 (2014).
Gil, V. Alejandro & Guallar, V. pyProCT: Automated Cluster Analysis for Structural Bioinformatics. Journal of Chemical Theory and Computation null (2014). doi:10.1021/ct500306s
Wittek, P., Lim, I. S. & Rubio-Campillo, X. Quantum Probabilistic Description of Dealing with Risk and Ambiguity in Foraging Decisions. Quantum Interaction: Lecture Notes in Computer Science 296-307 (2014). doi:10.1007/978-3-642-54943-4_27
Prisacari, B., Rodriguez, G., Jokanovic, A. & Minkenberg, C. Randomizing task placement and route choice does not randomize traffic (enough). Des. Autom. Embedded Syst. 1, (2014).
Kormann, J. et al. Retrieving Elastic Parameters from Short Offset Geometry Acquisition. 76th EAGE Conference & Exhibition, Expanded Abstract Th-E106-05 (2014). doi:10.3997/2214-4609.2014141
Macías, M. & Guitart, J. A Risk-based Model for Service Level Agreement Differentiation in Cloud Market Providers. Lecture Notes on Computer Science (LNCS), 14th IFIP WG 6.1 International Conference on Distributed Applications and Interoperable Systems (DAIS'14) Vol. 8460, 1-15 (2014).
Pérez, C. et al. Seasonal meningitis forecasting based on climate data in sub-Saharan Africa: the Niger case. Environmental Health Perspectives 122, 679–686 (2014).
Gonçalves, M., Barrera-Escoda, A., Guerreiro, D., Baldasano, J. M. & Cunillera, J. Seasonal to yearly assessment of temperature and precipitation trends in the North Western Mediterranean Basin by dynamical downscaling of climate scenarios at high resolution (1971–2050). Climatic Change 122, 243-256 (2014).

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