Publications

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2014
Casas, M. & Bronevetsky, G. Active Measurement of Memory Resource Consumption. 28th IEEE International Parallel & Distributed Processing Symposium (IPDPS) (2014).
Casas, M. & Bronevetsky, G. Active Measurement of the Impact of Network Switch Utilization on Application Performance. 28th IEEE International Parallel & Distributed Processing Symposium (IPDPS) (2014).
Balbo, A.L., Rubio-Campillo, X., Rondelli, B., Ramirez, M., Lancelotti, C., Torrano, A., Salpeteur, M., Lipovetzky, N., Reyes-García, V., Montañola-Sales, C. & Madella, M. Agent-Based Simulation of Holocene Monsoon Precipitation Patterns and Hunter-Gatherer Population Dynamics in Semi-arid Environments. Journal of Archaeological Method and Theory (2014).doi:10.1007/s10816-014-9203-1
Pay, M.T., Martínez, F., Guevara, M. & Baldasano, J.M. Air quality forecasts at kilometer scale grid over Spanish complex terrains. Geoscientific Model Development Discussions 7, 2293–2334 (2014).
Casoni, E., Jerusalem, A., Samaniego, C., Lafortune, P., Sáez, X., Eguzkitza, B., Vázquez, M. & Houzeaux, G. Alya: computational solid mechanics for supercomputers. (2014).
Lucas, M.F., Cabeza de Vaca, I., Takahashi, R., Rubio-Martínez, J. & Guallar, V. Atomic Level Rendering of DNA-Drug Encounter. Biophysical journal 106, 421-9 (2014).
Lensink, M.F., Moal, I.H., Bates, P.A., Kastritis, P.L., Melquiond, A.S.J., Karaca, E., Schmitz, C., van Dijk, M., Bonvin, A.M.J.J., Eisenstein, M., Jiménez-García, B., Grosdidier, S., Solernou, A., Pérez-Cano, L., Pallara, C., Fernández-Recio, J., Xu, J., Muthu, P., Praneeth Kilambi, K., Gray, J.J., Grudinin, S., Derevyanko, G., Mitchell, J.C., Wieting, J., Kanamori, E., Tsuchiya, Y., Murakami, Y., Sarmiento, J., Standley, D.M., Shirota, M., Kinoshita, K., Nakamura, H., Chavent, M., Ritchie, D.W., Park, H., Ko, J., Lee, H., Seok, C., Shen, Y., Kozakov, D., Vajda, S., Kundrotas, P.J., Vakser, I.A., Pierce, B.G., Hwang, H., Vreven, T., Weng, Z., Buch, I., Farkash, E., Wolfson, H.J., Zacharias, M., Qin, S., Zhou, H.-X., Huang, S.-Y., Zou, X., Wojdyla, J.A., Kleanthous, C. & Wodak, S.J. Blind prediction of interfacial water positions in CAPRI. Proteins 82, 620-32 (2014).
Hanzich, M., Rodriguez, J.E., Gutierrez, N. & Cela, J.M. BSIT: A FLEXIBLE PLATFORM FOR DEVELOPMENT OF EFFICIENT SIMULATION SOFTWARE. IACM - ECCOMAS (2014).
Fitó, O. & Guitart, J. Business-driven Management of Infrastructure-level Risks in Cloud Providers. Future Generation Computer Systems Vol. 32, 41-53 (2014).
Miranda, A. & Cortes, T. CRAID: Online RAID Upgrades using Dynamic Hot Data Reorganization. 12th USENIX Conference on File and Storage Technologies (2014).
Faustino, I., Curutchet, C., Luque, J.F. & Orozco, M. The DNA-forming properties of 6-selenoguanine. Physical chemistry chemical physics : PCCP 16, 1101-10 (2014).
Lezzi, D., Lordan, F., Rafanell, R. & Badia, R.M. Execution of scientific workflows on federated multi-cloud infrastructures. Euro-Par 2013: Parallel Processing Workshops 8374, 136-145 (2014).
Brömmel, D., Gibbon, P., Garcia, M., López, V., Marjanović, V. & Labarta, J. Experience with the MPI/STARSS programming model on a large production code. Advances in Parallel Computing 25, 357-366 (2014).
González-Férez, P., Piernas, J. & Cortes, T. A General Framework for Dynamic and Automatic I/O Scheduling in Hard and Solid-State Drives. Journal of Parallel and Distributed Computing 2014, 2380–2391 (2014).
Baldasano, J.M., Soret, A., Guevara, M., Martínez, F. & Gassó, S. Integrated assessment of air pollution using observations and modelling in Santa Cruz de Tenerife (Canary Islands). Science of The Total Environment 473–474, 576 - 588 (2014).
Angourakis, A., Rondelli, B., Stride, S., Rubio-Campillo, X., Balbo, A., Torrano, A., Martinez, V., Madella, M. & Gurt, J.M. Land Use Patterns in Central Asia. Step 1: The Musical Chairs Model. Journal of Archaeological Method and Theory (2014).doi:10.1007/s10816-013-9197-0
Avila, M., Codina, R. & Principe, J. Large Eddy Simulation of low Mach number flows using dynamic and orthogonal subgrid scales. Computer & Fluids (2014).
Akita, Y., Baldasano, J.M., Beelen, R., Cirach, M., de Hoogh, K., Hoek, G., Nieuwenhuijsen, M., Serre, M.L. & de Nazelle, A. Large Scale Air Pollution Estimation Method Combining Land Use Regression and Chemical Transport Modeling in a Geostatistical Framework. Environmental Science & Technology xx, xx-xx (2014).
Artigas, F., Marti, A., Schäfer, K., Christine, H. & Pechmann, I. Long term carbon storage potential and CO2 sink strength of a restored salt marsh in New Jersey. Agricultural and Forest Meteorology (2014).
Portella, G., Germann, M.W., Hud, N.V. & Orozco, M. MD and NMR Analyses of Choline and TMA Binding to Duplex DNA: On the Origins of Aberrant Sequence-Dependent Stability by Alkyl Cations in Aqueous and Water-Free Solvents. Journal of the American Chemical Society (2014).doi:10.1021/ja410698u
Portella, G., Germann, M.W., Hud, N.V. & Orozco, M. MD and NMR Analyses of Choline and TMA Binding to Duplex DNA: On the Origins of Aberrant Sequence-Dependent Stability by Alkyl Cations in Aqueous and Water-Free Solvents. Journal of the American Chemical Society (2014).doi:10.1021/ja410698u
de la Puente, J., Ferrer, M., Hanzich, M., Castillo, J.E. & Cela, J.M. Mimetic seismic wave modeling including topography on deformed staggered grids. Geophysics 79, T125-T141 (2014).
Folch, A., Mingari, L., Osores, M.S. & Collini, E. Modeling volcanic ash resuspension. Application to the 15-16 October 2011 outbreak episode in Central Patagonia, Argentina. Nat. Hazards Earth Syst. Sci 14, 119–133 (2014).
Filgueras, A., Gil, E., Jiménez-González, D., Alvarez, C., Martorell, X., Langer, J., Noguera, J. & Vissers, K. OmpSs@Zynq All-Programmable SoC Ecosystem. 22nd ACM/SIGDA International Symposium on Field-Programmable Gate Arrays (2014).at <http://www.eecg.utoronto.ca/FPGA2014/>
Baklanov, A., Schlünzen, K., Suppan, P., Baldasano, J., Brunner, D., Aksoyoglu, S., Carmichael, G., Douros, J., Flemming, J., Forkel, R., Galmarini, S., Gauss, M., Grell, G., Hirtl, M., Joffre, S., Jorba, O., Kaas, E., Kaasik, M., Kallos, G., Kong, X., Korsholm, U., Kurganskiy, A., Kushta, J., Lohmann, U., Mahura, A., Manders-Groot, A., Maurizi, A., Moussiopoulos, N., Rao, S.T., Savage, N., Seigneur, C., Sokhi, R.S., Solazzo, E., Solomos, S., Sørensen, B., Tsegas, G., Vignati, E., Vogel, B. & Zhang, Y. Online coupled regional meteorology chemistry models in Europe: current status and prospects. Atmospheric Chemistry and Physics 14, 317–398 (2014).
Meléndez, A., Sallarès, V., Ranero, C.R. & Kormann, J. Origin of water layer multiple phases with anomalously high amplitude in near-seafloor wide-angle seismic recordings. Geophysical Journal International 196, 243–252 (2014).
Barrera-Escoda, A., Gonçalves, M., Guerreiro, D., Cunillera, J. & Baldasano, J.M. Projections of temperature and precipitation extremes in the North Western Mediterranean Basin by dynamical downscaling of climate scenarios at high resolution (1971–2050). Climatic Change 122, 567-582 (2014).
Prisacari, B., Rodriguez, G., Jokanovic, A. & Minkenberg, C. Randomizing task placement and route choice does not randomize traffic (enough). Des. Autom. Embedded Syst. 1, (2014).
Pérez, C., Stanton, M., Diggle, P., Trzaska, S., Hugonnet, S., Miller, R., Perlwitz, J.P., Baldasano, J.M., Cuevas, E. & Thomson, M. Seasonal meningitis forecasting based on climate data in sub-Saharan Africa: the Niger case. Environmental Health Perspectives Advance publication, 1-33 (2014).
Gonçalves, M., Barrera-Escoda, A., Guerreiro, D., Baldasano, J.M. & Cunillera, J. Seasonal to yearly assessment of temperature and precipitation trends in the North Western Mediterranean Basin by dynamical downscaling of climate scenarios at high resolution (1971–2050). Climatic Change 122, 243-256 (2014).
Rosell, A., Meury, M., Alvarez-Marimon, E., Costa, M., Pérez-Cano, L., Zorzano, A., Fernández-Recio, J., Palacín, M. & Fotiadis, D. Structural bases for the interaction and stabilization of the human amino acid transporter LAT2 with its ancillary protein 4F2hc. Proceedings of the National Academy of Sciences of the United States of America 111, 2966-71 (2014).
2013
Marin, G., Cucchietti, F.M., Vázquez, M. & Tripiana, C. 2012 INTERNATIONAL SCIENCE & ENGINEERING VISUALIZATION CHALLENGE. Science 339, 518-519 (2013).
de la Puente, J., Castillo, J.E., Ferrer, M., Hanzich, M. & Cela, J.M. 3D Seismic Modelling with Topography Using Mimetic Finite-Differences. SEG Technical Program Expanded Abstracts 3449-3453 (2013).doi:http://dx.doi.org/10.1190/segam2013-0954.1
González-Álvarez, C., Sartor, J.B., Álvarez, C., Jiménez-González, D. & Eeckhout, L. Accelerating an Application Domain with Specialized Functional Units. ACM Transactions on Architecture and Code Optimization 10, 47:1–47:25 (2013).
Kosmidis, L., Quiñones, E., Abella, J., Vardanega, T. & Cazorla, F.J. Achieving Timing Composability with Probabilistic Timing Analysis. In IEEE International Symposium on Object-component-service-oriented Real-time distributed computing (ISORC) (2013).at <http://people.ac.upc.edu/equinone/docs/2013/isorc_2013.pdf>
HernáNdez, C., Silla, F. & Duato, J. Addressing Link Degradation in NoC-Based ULSI Designs. Euro-Par 2012: Parallel Processing Workshops 7640, 327-336 (2013).
Pelties, C., Gabriel, A.-A., Ampuero, J.-P., de la Puente, J. & Käser, M. The ADER-DG method for seismic wave propagation and earthquake rupture dynamics. Geophysical Research Abstracts 15, EGU2013-1182 (2013).
Peredo, O. Adjoint-based PDE-constrained optimization using HPC techniques. Master thesis in Information Technologies (specialization in Supercomputing) (2013).
Cugnasco, C., Hernandez, R., Becerra, Y., Torres, J. & Ayguadé, E. Aeneas: A Tool to Enable Applications to Effectively Use Non-Relational Databases. 2013 International Conference on Computational Science 2561–2564 (2013).
Montañola-Sales, C., Casanovas-Garcia, J., Cela, J.M., Onggo, B.S.S. & Kaplan-Marcusan, A. Agent-Based Simulation Of Large Population Dynamics. European Conference on Complex Systems (2013).at <http://www.eccs13.eu/images/site/book_of_abstracts.pdf>
Baldasano, J.M. Air Quality Forecasting Systems: Needs of Computational Resources and Database. International Computing for the Atmospheric Sciences Symposium 2013 , (2013).
Baldasano, J.M. Air Quality Modelling. Evaluation and post-processing techniques. ITaRS (Initial Training for atmospheric Remote Sensing) Start-up workshop , (2013).
Koldan, J., Puzyrev, V. & Cela, J.M. Algebraic Multigrid Preconditioner for Numerical Finite-Element Solutions of Electromagnetic Induction Problems. SIAM Conference on Mathematical and Computational Issues in the Geosciences, Padova, Italy (2013).
Koldan, J., Puzyrev, V. & Cela, J.M. Algebraic Multigrid Preconditioning for Finite-element Methods for 3-D Electromagnetic Modelling in Geophysics. 75th EAGE Conference & Exhibition (2013).
de la Cruz, R. & Araya-Polo, M. Algorithm 942: Semi-stencil. ACM Transactions On Mathematical Software 40, (2013).
Sucar, L.B. Algoritmos paralelos para la detección y corrección de ruido impulsivo y ruido gaussiano basados en lógica fuzzy. (2013).doi:http://hdl.handle.net/10045/32635
Perello, J., Spadaro, S., Ricciardi, S., Careglio, D., Peng, S., Nejabati, R., Zervas, G., Simeonidou, D., Predieri, A., Biancani, M., Dorren, H.S., Lucente, S., Luo, J., Calabretta, N., Bernini, G., Ciulli, N., Sancho, J.C., Iordache, S., Farreras, M., Becerra, Y., Liou, C., Hussain, I., Yin, Y., Liu, L. & Proietti, R. All-optical packet/circuit switching-based data center network for enhanced scalability, latency, and throughput. Network, IEEE 27, 14-22 (2013).
Fernandes, A.P., Ferreira, J., Miranda, A.I., Baldasano, J.M. & Tchepel, O. Análise de episódios de poeiras utilizando a modelação da qualidade do ar e dados de satélite. 10º CNA-12ª CNEA: 10ª Conferência Nacional do Ambiente- 12ª Congresso Nacional de Engenharia do Ambiente , (2013).
Tchepel, O., Ferreira, J., Fernandes, A.P., Basart, S., Baldasano, J.M. & Borrego, C. Analysis of long-range transport of aerosols for Portugal using 3D Chemical Transport Model and satellite measurements. Atmospheric Environment 64, 229-241 (2013).
Ahmadabadi, F.Y., Jiménez, D., Álvarez, C., Etsion, Y. & Badia, R.M. Analysis of the Task Superscalar Architecture Hardware Design. 2013 International Conference on Computational Science 339–348 (2013).

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