Publications

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Submitted
Marras, S., Kelly, J.F., Giraldo, F.X. & Vázquez, M. Variational Multiscale Stabilization of High-Order Spectral Elements for the Convection-Diffusion Equation. Journal (Submitted).
In Press
Reyes-García, V., Guèze, M., Luz, A.C., Paneque-Galvez, J., Macía, M.J., Orta-Martinez, M., Pino, J. & Rubio-Campillo, X. Evidence of traditional knowledge loss among a contemporary indigenous society. Evolution & Human Behavior (In Press).
2013
Tchepel, O., Ferreira, J., Fernandes, A.P., Basart, S., Baldasano, J.M. & Borrego, C. Analysis of long-range transport of aerosols for Portugal using 3D Chemical Transport Model and satellite measurements. Atmospheric Environment 64, 229-241 (2013).
Gobbi, G.P., Angelini, F., Barnaba, F., Costabile, F., Baldasano, J.M., Basart, S., Sozzi, R. & Bolignano, A. Changes in particulate matter physical properties during Saharan advections over Rome (Italy): a four-year study, 2001–2004. Atmospheric Chemistry and Physics Discussions 13, 4963–4988 (2013).
Ferreira, J., Guevara, M., Baldasano, J.M., Tchepel, O., Schaap, M., Miranda, A.I. & Borrego, C. A comparative analysis of two highly spatially resolved European atmospheric emission inventories. Atmospheric Environment 75, 43 - 57 (2013).
Polo, J., Becerra, Y., Carrera, D., Steinder, M., Whalley, I., Torres, J. & Ayguadé, E. Deadline-Based MapReduce Workload Management. IEEE Transactions on Network and Service Management PP, 1-14 (2013).
Rubio-Campillo, X., Cela, J.M. & Hernández, F.X. The development of new infantry tactics during early XVIIIth century: a computer simulation approach to modern military history. Journal of Simulation (2013).
Lensing, P., Cortes, T. & Brinkmann, A. Direct Lookup and Hash-Based Metadata Placement for Local File Systems. 6th Internationa System and Storage Conference (Systor 2013) (2013).
Rao, S., Raj, S., Cossins, B., Marro, M., Guallar, V. & Petrov, D. Direct observation of single DNA structural alterations at low forces with surface-enhanced Raman scattering. Biophysical journal 104, 156-62 (2013).
Tomić, S., Akpinar, E., Cristal, A., Ünsal, O.S. & Valero, M. EcoTM: Conflict-Aware Economical Unbounded Hardware Transactional Memory. International Conference on Computational Science, ICCS 2013 (2013).
Emperador, A., Solernou, A., Sfriso, P., Pons, C., Gelpí, J.L., Fernández-Recio, J. & Orozco, M. Efficient relaxation of protein-protein interfaces by discrete molecular dynamics simulations. Journal of Chemical Theory and Computation 9, 1222–1229 (2013).
Cortes, T. & Queralt, A. Enabling flexible and efficient data sharing without losing control. CloudScape V. Cloud for savings, Cloud for quality (2013).
Soret, A., Jiménez-Guerrero, P., Andres, D., Cardenas, F., Rueda, S. & Baldasano, J.M. Estimation of future emission scenarios for analysing the impact of traffic mobility on a large Mediterranean conurbation in the Barcelona Metropolitan Area (Spain). Atmospheric Pollution Research 4, 22-32 (2013).
Aguilera, I., Basagaña, X., Pay, M.T., Agis, D., Bouso, L., Foraster, M., Rivera, M., Baldasano, J.M. & Künzli, N. Evaluation of the CALIOPE air quality forecasting system for epidemiological research: The example of NO2 in the province of Girona (Spain). Atmospheric Environment 72, 134 - 141 (2013).
Strassburg, J. & Alexandrov, V. Facilitating Analysis of Monte Carlo Dense Matrix Inversion Algorithm Scaling Behaviour through Simulation. Journal of Computational Science (2013).
Marinescu, M.-C. & Sánchez, C. Fusing statecharts and java. ACM Trans. Embed. Comput. Syst. 12, 45:1–45:21 (2013).
Julià, A., Domènech, E., Ricart, E., Tortosa, R., García-Sánchez, V., Gisbert, J.P., Nos Mateu, P., Gutiérrez, A., Gomollón, F., Mendoza, J.L., García-Planella, E., Barreiro-de Acosta, M., Muñoz, F., Vera, M., Saro, C., Esteve, M., Andreu, M., Alonso, A., López-Lasanta, M., Codó, L., Gelpí, J.L., García-Montero, A., Bertranpetit, J., Absher, D., Panés, J. & Marsal, S. A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300. Gut (2013).doi:10.1136/gutjnl-2012-302865
Loridan, T., Lindberg, F., Jorba, O., Kotthaus, S., Grossman-Clarke, S. & Grimmond, C.S.B. High Resolution Simulation of the Variability of Surface Energy Balance Fluxes Across Central London with Urban Zones for Energy Partitioning. Boundary-Layer Meteorology , 1-31 (2013).
Hospital, A. & Gelpi, J.L. High‐throughput molecular dynamics simulations: toward a dynamic view of macromolecular structure. Wiley Interdisciplinary Reviews: Computational Molecular Science (2013).doi:10.1002/wcms.1142
Alexandrov, V. & Strassburg, J. Hybrid Scalable Monte Carlo Methods for Approximate Matrix Inversion. "Hybrid Scalable Monte Carlo Methods for Approximate Matrix Inversion" submitted to 9th IMACS Seminar on Monte Carlo Methods 2013 (2013).
Bueno, J., Badia, R.M., Martorell, X., Ayguade, E. & Labarta, J. Implementing OmpSs Support for Regions of Data in Architectures with Multiple Address Spaces. Proc. of the 27th International Conference on Supercomputing (2013).at <http://www.ics-conference.org/>
Sciabola, S., Cao, Q., Orozco, M., Faustino, I. & Stanton, R.V. Improved nucleic acid descriptors for siRNA efficacy prediction. Nucleic acids research 41, 1383-94 (2013).
Raimondi, F., Felline, A., Portella, G., Orozco, M. & Fanelli, F. Light on the structural communication in Ras GTPases. Journal of biomolecular structure & dynamics 31, 142-57 (2013).
Rajovic, N., Puzovic, N., Vilanova, L., Villavieja, C. & Ramirez, A. The low-power architecture approach towards exascale computing. Journal of Computational Science (2013).doi:http://dx.doi.org/10.1016/j.jocs.2013.01.002
Baldasano, J.M. & Basart, S. Mineral dust modelling from meso to global scales. Workshop CV Dust Atmospheric Aerosols in Cape Verde Region , (2013).
Tchepel, O., Gama, C., Ferreira, J., Cardoso, J., Basart, S., Baldasano, J.M., Borrego, C. & Pio, C. Mineral dust modelling in Cape Verde. Workshop CV Dust Atmospheric Aerosols in Cape Verde Region , (2013).
Spada, M., Jorba, O., Pérez, C., Janjic, Z. & Baldasano, J.M. Modeling and evaluation of the global sea-salt aerosol distribution: sensitivity to emission schemes and resolution effects at coastal/orographic sites. Atmospheric Chemistry and Physics Discussions 13, 11597–11657 (2013).
Hosseini, A., Espona-Fiedler, M., Soto-Cerrato, V., Quesada, R., Pérez-Tomás, R. & Guallar, V. Molecular Interactions of Prodiginines with the BH3 Domain of Anti-Apoptotic Bcl-2 Family Members. PloS one 8, e57562 (2013).
Strassburg, J. & Alexandrov, V. A Monte Carlo Approach to Sparse Approximate Inverse Matrix Computations. submitted to ICCS2013 (2013).
Puzyrev, V., Koldan, J., de la Puente, J., Houzeaux, G., Vázquez, M. & Cela, J.M. A parallel finite-element method for three-dimensional controlled-source electromagnetic forward modelling. Geophysical Journal International (2013).
Saravanan, K.P., Carpenter, P. & Ramirez, A. Power/Performance evaluation of Energy Efficient Ethernet (EEE) for High Performance Computing. IEEE International Symposium on Performance Analysis of Systems and Software - ISPASS 2013 (2013).
Ciesko, J., Bueno, J., Puzovic, N., Ramirez, A., Badia, R.M. & Labarta, J. Programmable and Scalable Reductions on Clusters. Proceedings of 27th IEEE International Parallel and Distributed Processing Symposium (IEEE IPDPS) (2013).
Lezzi, D., Rafanell, R., Torser, E., Giovanni, R.D., Blanquer, I. & Badia, R.M. Programming ecological niche modeling workflows in the cloud. Proceedings of the 27th IEEE International Conference on Advanced Information Networking and Applications (AINA-2013) (2013).doi:10.1109/WAINA.2013.6
Nurbakova, D., Rusakov, S. & Alexandrov, V. Quantifying Uncertainty in Phylogenetic Studies of the Slavonic Languages. submitted to ICCS2013 (2013).
ivan Ratkovic,, Palomar, O., milan stanic,, Ünsal, O.S., Cristal, A. & Valero, M. On the Selection of Adder Unit in Energy Efficient Vector Processing. ISQED (2013).
Lucas, F.M. & Guallar, V. Single vs. multiple ligand pathways in globins: A computational view. Biochimica et biophysica acta (2013).doi:10.1016/j.bbapap.2013.01.035
Wittek, P. & Rubio-Campillo, X. Social Simulations Accelerated: Large-Scale Agent-Based Modeling on a GPU Cluster. GPU Technology Conference (2013).at <http://on-demand.gputechconf.com/gtc/2013/poster/pdf/P0197_PeterWittek.pdf>
Torchala, M., Moal, I.H., Chaleil, R.A.G., Fernandez-Recio, J. & Bates, P.A. SwarmDock: a server for flexible protein-protein docking. Bioinformatics (Oxford, England) (2013).doi:10.1093/bioinformatics/btt038
Alexandrov, N., Ramirez-Velarde, R. & Alexandrov, V. Technological Advances in Interactive Collaborative Learning. book (New York, 2013).
Smiljković, V., Nowack, M., Miletić, N., Harris, T., Unsal, O., Cristal, A. & Valero, M. TM-dietlibc: A TM-aware Real-world System Library. The 27th IEEE International Parallel and Distributed Processing Symposium (IPDPS) (2013).
Smiljković, V., Stipić, S., Unsal, O., Cristal, A. & Valero, M. Transaction Coalescing - Lowering Transactional Overheads by Merging Transactions. Sixth Workshop on Programmability Issues for Heterogeneous Multicores (MULTIPROG-2013) (2013).
Pessolani, P., Cortes, T., Gonnet, S. & Tinetti, F.G. Un mecanismo de IPC de microkernel embebido en el kernel de Linux. Workshop de Investigadores en Ciencias de la Computación (2013).
Marras, S., Moragues, M., Vázquez, M., Jorba, O. & Houzeaux, G. A Variational Multiscale Stabilized Finite Element Method for the Solution of the Euler Equations of Nonhydrostatic Stratified Flows. Journal of Computational Physics 236, 380–407 (2013).
2012
Nuhić, I., Šterk, M. & Cortes, T. AbacusFS integrated storage and computational platform. IEEE MIPRO 2012 (2012).
Oro, D., Fernandez, C., Segura, C., Martorell, X. & Hernando, J. Accelerating Boosting-based Face Detection on GPUs. Proc. of the 41st International Conference on Parallel Processing (2012).doi:10.1109/ICPP.2012.65
Maric, B., Abella, J. & Valero, M. ADAM: An Efficient Data Management Mechanism for Hybrid High and Ultra-Low Voltage Operation Caches. ACM/IEEE Great Lakes Symposium on VLSI 245–250 (2012).at <http://capinfo.e.ac.upc.edu/PDFs/dir05/file004123.pdf>
Toledano, C., Bennouna, Y., Cachorro, V.E., de Galisteo, O.J.P., Stohl, A., Stebel, K., Kristiansen, N.I., Olmo, F.J., Lyamani, H., Obregón, M.A., Estellés, V., Wagner, F., Baldasano, J.M., González-Castanedo, Y., Clarisse, L. & de Frutos, A.M. Aerosol properties of the Eyjafjallajökull ash derived from sun photometer and satellite observations over the Iberian Peninsula. Atmospheric Environment 48, 22-32 (2012).
Mamouri, R.E., Kleanthoua, S., Basart, S., Amiridis, V., Nisantzi, A., Hatzimitsis, D. & Baldasano, J.M. Aerosol Variability over Lemesos, Cyprus. Use of Ground Based Data, Satellite Observations and Model Simulations. European Aerosol Conference 2012 (EAC-2012) , (2012).
Basart, S., Pay, M.T., Jorba, O., Pérez, C., Jiménez-Guerrero, P., Schulz, M. & Baldasano, J.M. Aerosols in the CALIOPE air quality modelling system: evaluation and analysis of PM levels, optical depths and chemical composition over Europe. Atmospheric Chemistry and Physics 12, 3363–3392 (2012).
Baldasano, J.M. Air Quality Modeling over Western Mediterranean and Transport of Mineral Dust from Sahara desert. Jet Propulsion Laboratory-NASA , (2012).

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